Hb_011491_010

Information

Type -
Description -
Location Contig11491: 25506-28547
Sequence    

Annotation

kegg
ID rcu:RCOM_0797270
description Protein YME1, putative (EC:3.6.4.3)
nr
ID XP_002516427.1
description Protein YME1, putative [Ricinus communis]
swissprot
ID Q8LQJ8
description ATP-dependent zinc metalloprotease FTSH 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1
trembl
ID B9RRQ8
description Protein YME1, putative OS=Ricinus communis GN=RCOM_0797270 PE=3 SV=1
Gene Ontology
ID GO:0009536
description atp-dependent zinc metalloprotease ftsh mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04502: 27171-28359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011491_010 0.0 - - Protein YME1, putative [Ricinus communis]
2 Hb_001005_190 0.047647669 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
3 Hb_001828_130 0.0553036407 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
4 Hb_007163_120 0.0571690797 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
5 Hb_000243_250 0.0623178618 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
6 Hb_000092_020 0.063622075 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
7 Hb_001818_070 0.0641775001 - - carbon catabolite repressor protein, putative [Ricinus communis]
8 Hb_007416_180 0.0643781567 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
9 Hb_002043_140 0.0650101557 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
10 Hb_001838_060 0.0657047433 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
11 Hb_000395_130 0.0665602036 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
12 Hb_000049_260 0.0685750117 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_015807_070 0.0699437151 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
14 Hb_003370_030 0.0703184859 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
15 Hb_007765_110 0.070906712 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
16 Hb_002798_070 0.0716743368 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
17 Hb_008511_090 0.0724756868 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
18 Hb_000538_270 0.0726338813 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
19 Hb_012055_060 0.0729398079 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
20 Hb_000003_190 0.07319896 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_011491_010 Hb_011491_010 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_007163_120 Hb_007163_120 Hb_011491_010--Hb_007163_120 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070 Hb_009767_100 Hb_009767_100 Hb_001005_190--Hb_009767_100 Hb_000538_270 Hb_000538_270 Hb_001005_190--Hb_000538_270 Hb_001005_190--Hb_007163_120 Hb_005288_010 Hb_005288_010 Hb_001005_190--Hb_005288_010 Hb_008511_090 Hb_008511_090 Hb_001005_190--Hb_008511_090 Hb_002798_070 Hb_002798_070 Hb_001828_130--Hb_002798_070 Hb_001828_130--Hb_000243_250 Hb_000322_150 Hb_000322_150 Hb_001828_130--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030 Hb_003464_090 Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_002872_040 Hb_002872_040 Hb_000243_250--Hb_002872_040 Hb_000243_250--Hb_002798_070 Hb_012779_090 Hb_012779_090 Hb_000243_250--Hb_012779_090 Hb_012055_060 Hb_012055_060 Hb_000243_250--Hb_012055_060 Hb_000243_250--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_000092_020--Hb_000395_130 Hb_001080_230 Hb_001080_230 Hb_000092_020--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000092_020--Hb_000003_190 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_000574_540 Hb_000574_540 Hb_000092_020--Hb_000574_540 Hb_140506_010 Hb_140506_010 Hb_001818_070--Hb_140506_010 Hb_001838_060 Hb_001838_060 Hb_001818_070--Hb_001838_060 Hb_004767_050 Hb_004767_050 Hb_001818_070--Hb_004767_050 Hb_003211_020 Hb_003211_020 Hb_001818_070--Hb_003211_020 Hb_048219_010 Hb_048219_010 Hb_001818_070--Hb_048219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0181 17.0427 5.90184 6.83352 10.352 10.6918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.1079 10.6895 10.9587 8.51683 7.01569

CAGE analysis