Hb_002798_070

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig2798: 68798-81776
Sequence    

Annotation

kegg
ID rcu:RCOM_0609080
description transcription factor, putative
nr
ID XP_012089330.1
description PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
swissprot
ID C0SUT9
description Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana GN=JMJ16 PE=2 SV=1
trembl
ID A0A067JLR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23546 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lysine-specific demethylase jmj16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29145: 68890-81407 , PASA_asmbl_29146: 80627-81807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002798_070 0.0 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
2 Hb_012779_090 0.0554111641 - - PREDICTED: lipase member N [Jatropha curcas]
3 Hb_000243_250 0.0579273057 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
4 Hb_002818_030 0.0594178228 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
5 Hb_002783_040 0.062187227 transcription factor TF Family: IWS1 -
6 Hb_162275_050 0.0623319674 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
7 Hb_000442_010 0.0623885668 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
8 Hb_005725_210 0.065051727 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
9 Hb_002263_040 0.0652525503 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_000172_430 0.0655499902 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002234_170 0.0656364762 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
12 Hb_001828_130 0.0658441306 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
13 Hb_000049_260 0.0675693509 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_004916_010 0.068181336 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
15 Hb_009150_020 0.0696771722 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
16 Hb_012194_030 0.070460588 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
17 Hb_011491_010 0.0716743368 - - Protein YME1, putative [Ricinus communis]
18 Hb_010712_050 0.0717131033 - - PREDICTED: protein ELC-like [Jatropha curcas]
19 Hb_002636_100 0.0738343499 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
20 Hb_003030_060 0.074225664 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002798_070 Hb_002798_070 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_002783_040 Hb_002783_040 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_012779_090--Hb_162275_050 Hb_012779_090--Hb_000243_250 Hb_012194_030 Hb_012194_030 Hb_012779_090--Hb_012194_030 Hb_000395_130 Hb_000395_130 Hb_012779_090--Hb_000395_130 Hb_001410_020 Hb_001410_020 Hb_012779_090--Hb_001410_020 Hb_002872_040 Hb_002872_040 Hb_000243_250--Hb_002872_040 Hb_011491_010 Hb_011491_010 Hb_000243_250--Hb_011491_010 Hb_012055_060 Hb_012055_060 Hb_000243_250--Hb_012055_060 Hb_000092_020 Hb_000092_020 Hb_000243_250--Hb_000092_020 Hb_004916_010 Hb_004916_010 Hb_002818_030--Hb_004916_010 Hb_019863_070 Hb_019863_070 Hb_002818_030--Hb_019863_070 Hb_003849_110 Hb_003849_110 Hb_002818_030--Hb_003849_110 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310 Hb_002234_170 Hb_002234_170 Hb_002783_040--Hb_002234_170 Hb_000061_030 Hb_000061_030 Hb_002783_040--Hb_000061_030 Hb_002253_080 Hb_002253_080 Hb_002783_040--Hb_002253_080 Hb_009150_020 Hb_009150_020 Hb_002783_040--Hb_009150_020 Hb_001322_130 Hb_001322_130 Hb_002783_040--Hb_001322_130 Hb_162275_050--Hb_012194_030 Hb_000614_210 Hb_000614_210 Hb_162275_050--Hb_000614_210 Hb_162275_050--Hb_001410_020 Hb_003835_070 Hb_003835_070 Hb_162275_050--Hb_003835_070 Hb_003464_090 Hb_003464_090 Hb_162275_050--Hb_003464_090 Hb_002263_040 Hb_002263_040 Hb_000442_010--Hb_002263_040 Hb_001104_170 Hb_001104_170 Hb_000442_010--Hb_001104_170 Hb_005725_210 Hb_005725_210 Hb_000442_010--Hb_005725_210 Hb_005389_160 Hb_005389_160 Hb_000442_010--Hb_005389_160 Hb_000442_010--Hb_000243_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.6379 16.118 6.85755 5.95994 8.37134 7.99804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3334 8.39321 10.51 7.33819 8.59213

CAGE analysis