Hb_000442_010

Information

Type -
Description -
Location Contig442: 14220-14855
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19060g
description POPTRDRAFT_724377; hypothetical protein
nr
ID XP_002316187.2
description hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
swissprot
ID O80915
description PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1
trembl
ID A9PCQ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19060g PE=2 SV=1
Gene Ontology
ID GO:0005783
description pra1 family protein b3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 021_A21.ab1: 14153-14962

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_010 0.0 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
2 Hb_002798_070 0.0623885668 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
3 Hb_002263_040 0.0627747713 - - carbon catabolite repressor protein, putative [Ricinus communis]
4 Hb_001104_170 0.0629663232 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
5 Hb_005725_210 0.0660552649 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
6 Hb_005389_160 0.0764445572 - - PREDICTED: casein kinase I [Jatropha curcas]
7 Hb_000243_250 0.0772003237 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
8 Hb_003055_140 0.078292104 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
9 Hb_001828_130 0.0793658479 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
10 Hb_001766_020 0.0798308399 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
11 Hb_004916_010 0.0835515 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
12 Hb_012779_090 0.0852483629 - - PREDICTED: lipase member N [Jatropha curcas]
13 Hb_000015_170 0.0853645116 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001410_020 0.0854006398 - - cdk8, putative [Ricinus communis]
15 Hb_000347_120 0.0860353419 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
16 Hb_000861_080 0.0875513127 - - PREDICTED: protein ELC-like [Jatropha curcas]
17 Hb_000373_100 0.0880736072 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
18 Hb_001629_060 0.0881063416 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
19 Hb_009150_020 0.0881492349 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
20 Hb_002636_100 0.09095635 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000442_010 Hb_000442_010 Hb_002798_070 Hb_002798_070 Hb_000442_010--Hb_002798_070 Hb_002263_040 Hb_002263_040 Hb_000442_010--Hb_002263_040 Hb_001104_170 Hb_001104_170 Hb_000442_010--Hb_001104_170 Hb_005725_210 Hb_005725_210 Hb_000442_010--Hb_005725_210 Hb_005389_160 Hb_005389_160 Hb_000442_010--Hb_005389_160 Hb_000243_250 Hb_000243_250 Hb_000442_010--Hb_000243_250 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_002783_040 Hb_002783_040 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_002263_040--Hb_002798_070 Hb_002636_100 Hb_002636_100 Hb_002263_040--Hb_002636_100 Hb_002263_040--Hb_002783_040 Hb_000061_030 Hb_000061_030 Hb_002263_040--Hb_000061_030 Hb_000977_120 Hb_000977_120 Hb_002263_040--Hb_000977_120 Hb_001104_170--Hb_005389_160 Hb_001766_020 Hb_001766_020 Hb_001104_170--Hb_001766_020 Hb_000291_010 Hb_000291_010 Hb_001104_170--Hb_000291_010 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_005725_210--Hb_002798_070 Hb_003030_060 Hb_003030_060 Hb_005725_210--Hb_003030_060 Hb_004916_010 Hb_004916_010 Hb_005725_210--Hb_004916_010 Hb_005725_210--Hb_002818_030 Hb_001828_130 Hb_001828_130 Hb_005725_210--Hb_001828_130 Hb_000373_100 Hb_000373_100 Hb_005389_160--Hb_000373_100 Hb_010417_070 Hb_010417_070 Hb_005389_160--Hb_010417_070 Hb_000347_120 Hb_000347_120 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_003398_080 Hb_003398_080 Hb_005389_160--Hb_003398_080 Hb_002872_040 Hb_002872_040 Hb_000243_250--Hb_002872_040 Hb_000243_250--Hb_012779_090 Hb_011491_010 Hb_011491_010 Hb_000243_250--Hb_011491_010 Hb_012055_060 Hb_012055_060 Hb_000243_250--Hb_012055_060 Hb_000092_020 Hb_000092_020 Hb_000243_250--Hb_000092_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.569 150.299 61.4553 44.5635 52.8918 47.168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.0377 58.2893 73.4914 54.4427 55.0562

CAGE analysis