Hb_012055_060

Information

Type -
Description -
Location Contig12055: 56111-60247
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10270g
description hypothetical protein
nr
ID XP_012079342.1
description PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5G4K2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s10270g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06402: 56076-58172 , PASA_asmbl_06403: 58176-60166
cDNA
(Sanger)
(ID:Location)		 040_G16.ab1: 56076-58141

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012055_060 0.0 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
2 Hb_000243_250 0.0658309481 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
3 Hb_005016_160 0.066697542 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
4 Hb_003055_060 0.0698039257 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
5 Hb_001005_190 0.0727854508 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
6 Hb_011491_010 0.0729398079 - - Protein YME1, putative [Ricinus communis]
7 Hb_008511_090 0.0729409845 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
8 Hb_012564_030 0.0745789728 - - coronatine-insensitive 1 [Hevea brasiliensis]
9 Hb_000331_670 0.0786341331 - - PREDICTED: protein tipD [Jatropha curcas]
10 Hb_007163_120 0.0793787133 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
11 Hb_009767_100 0.0799746247 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
12 Hb_000983_090 0.0810047743 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
13 Hb_000331_680 0.0821263259 - - Protein bem46, putative [Ricinus communis]
14 Hb_000886_050 0.0844697418 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
15 Hb_007765_110 0.0850601341 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
16 Hb_003082_010 0.0861116674 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
17 Hb_001828_130 0.0873303487 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
18 Hb_000077_140 0.0874792579 - - structural constituent of cell wall, putative [Ricinus communis]
19 Hb_002798_070 0.0887905197 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
20 Hb_000696_090 0.0899921205 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]

Gene co-expression network

sample Hb_012055_060 Hb_012055_060 Hb_000243_250 Hb_000243_250 Hb_012055_060--Hb_000243_250 Hb_005016_160 Hb_005016_160 Hb_012055_060--Hb_005016_160 Hb_003055_060 Hb_003055_060 Hb_012055_060--Hb_003055_060 Hb_001005_190 Hb_001005_190 Hb_012055_060--Hb_001005_190 Hb_011491_010 Hb_011491_010 Hb_012055_060--Hb_011491_010 Hb_008511_090 Hb_008511_090 Hb_012055_060--Hb_008511_090 Hb_002872_040 Hb_002872_040 Hb_000243_250--Hb_002872_040 Hb_002798_070 Hb_002798_070 Hb_000243_250--Hb_002798_070 Hb_012779_090 Hb_012779_090 Hb_000243_250--Hb_012779_090 Hb_000243_250--Hb_011491_010 Hb_000092_020 Hb_000092_020 Hb_000243_250--Hb_000092_020 Hb_005541_010 Hb_005541_010 Hb_005016_160--Hb_005541_010 Hb_000334_220 Hb_000334_220 Hb_005016_160--Hb_000334_220 Hb_003052_140 Hb_003052_140 Hb_005016_160--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_005016_160--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_005016_160--Hb_000336_250 Hb_009767_100 Hb_009767_100 Hb_003055_060--Hb_009767_100 Hb_005288_010 Hb_005288_010 Hb_003055_060--Hb_005288_010 Hb_003055_060--Hb_000243_250 Hb_003055_060--Hb_011491_010 Hb_003055_060--Hb_001005_190 Hb_001005_190--Hb_011491_010 Hb_001005_190--Hb_009767_100 Hb_000538_270 Hb_000538_270 Hb_001005_190--Hb_000538_270 Hb_007163_120 Hb_007163_120 Hb_001005_190--Hb_007163_120 Hb_001005_190--Hb_005288_010 Hb_001005_190--Hb_008511_090 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_011491_010--Hb_007163_120 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070 Hb_000070_080 Hb_000070_080 Hb_008511_090--Hb_000070_080 Hb_004109_030 Hb_004109_030 Hb_008511_090--Hb_004109_030 Hb_008511_090--Hb_007163_120 Hb_000479_220 Hb_000479_220 Hb_008511_090--Hb_000479_220 Hb_002078_220 Hb_002078_220 Hb_008511_090--Hb_002078_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.9323 39.4295 17.0472 17.1497 20.0716 16.7917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0729 21.4023 28.4427 15.268 13.752

CAGE analysis