Hb_003055_060

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig3055: 38936-42997
Sequence    

Annotation

kegg
ID rcu:RCOM_1062710
description hypothetical protein
nr
ID XP_012091531.1
description PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21382 PE=4 SV=1
Gene Ontology
ID GO:0003682
description bromodomain-containing 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32240: 38909-39332 , PASA_asmbl_32241: 40132-42784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_060 0.0 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
2 Hb_012055_060 0.0698039257 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
3 Hb_009767_100 0.0757331913 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
4 Hb_005288_010 0.0798256948 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000243_250 0.0801558881 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
6 Hb_011491_010 0.0806963985 - - Protein YME1, putative [Ricinus communis]
7 Hb_001005_190 0.081414902 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
8 Hb_001828_130 0.0823269738 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
9 Hb_001021_170 0.0833832909 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
10 Hb_002872_040 0.0899497934 - - pumilio, putative [Ricinus communis]
11 Hb_000322_150 0.0903374195 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
12 Hb_004440_040 0.0909104392 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_005016_160 0.0939345587 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
14 Hb_000336_250 0.0944523295 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
15 Hb_000567_210 0.0976571877 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
16 Hb_002636_100 0.0978324195 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
17 Hb_003752_100 0.0985599724 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
18 Hb_002411_030 0.0986789699 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
19 Hb_076693_020 0.0991634022 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
20 Hb_008511_090 0.0997542966 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]

Gene co-expression network

sample Hb_003055_060 Hb_003055_060 Hb_012055_060 Hb_012055_060 Hb_003055_060--Hb_012055_060 Hb_009767_100 Hb_009767_100 Hb_003055_060--Hb_009767_100 Hb_005288_010 Hb_005288_010 Hb_003055_060--Hb_005288_010 Hb_000243_250 Hb_000243_250 Hb_003055_060--Hb_000243_250 Hb_011491_010 Hb_011491_010 Hb_003055_060--Hb_011491_010 Hb_001005_190 Hb_001005_190 Hb_003055_060--Hb_001005_190 Hb_012055_060--Hb_000243_250 Hb_005016_160 Hb_005016_160 Hb_012055_060--Hb_005016_160 Hb_012055_060--Hb_001005_190 Hb_012055_060--Hb_011491_010 Hb_008511_090 Hb_008511_090 Hb_012055_060--Hb_008511_090 Hb_009767_100--Hb_001005_190 Hb_009767_100--Hb_005288_010 Hb_000859_060 Hb_000859_060 Hb_009767_100--Hb_000859_060 Hb_009767_100--Hb_012055_060 Hb_000189_560 Hb_000189_560 Hb_009767_100--Hb_000189_560 Hb_005288_010--Hb_001005_190 Hb_000322_150 Hb_000322_150 Hb_005288_010--Hb_000322_150 Hb_000363_400 Hb_000363_400 Hb_005288_010--Hb_000363_400 Hb_002872_040 Hb_002872_040 Hb_005288_010--Hb_002872_040 Hb_000243_250--Hb_002872_040 Hb_002798_070 Hb_002798_070 Hb_000243_250--Hb_002798_070 Hb_012779_090 Hb_012779_090 Hb_000243_250--Hb_012779_090 Hb_000243_250--Hb_011491_010 Hb_000092_020 Hb_000092_020 Hb_000243_250--Hb_000092_020 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_007163_120 Hb_007163_120 Hb_011491_010--Hb_007163_120 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070 Hb_000538_270 Hb_000538_270 Hb_001005_190--Hb_000538_270 Hb_001005_190--Hb_007163_120 Hb_001005_190--Hb_008511_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9712 41.9755 12.6234 9.96355 17.4432 16.5916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1418 17.7017 23.3446 14.8352 11.9912

CAGE analysis