Hb_001828_130

Information

Type -
Description -
Location Contig1828: 140770-146959
Sequence    

Annotation

kegg
ID rcu:RCOM_1679050
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_012071037.1
description PREDICTED: transcription factor GTE8-like [Jatropha curcas]
swissprot
ID Q9LK27
description Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2
trembl
ID A0A067LNB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17819: 145635-146925 , PASA_asmbl_17820: 140961-146601 , PASA_asmbl_17821: 146603-146925 , PASA_asmbl_17823: 147927-158297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_130 0.0 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
2 Hb_011491_010 0.0553036407 - - Protein YME1, putative [Ricinus communis]
3 Hb_002798_070 0.0658441306 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
4 Hb_000243_250 0.0732940437 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
5 Hb_000322_150 0.0758952937 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
6 Hb_002636_100 0.0761594129 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
7 Hb_012564_030 0.0777639871 - - coronatine-insensitive 1 [Hevea brasiliensis]
8 Hb_000049_260 0.0787419501 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_001104_190 0.0788814574 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
10 Hb_005725_210 0.0789891474 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
11 Hb_000442_010 0.0793658479 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
12 Hb_002263_040 0.081704225 - - carbon catabolite repressor protein, putative [Ricinus communis]
13 Hb_001818_070 0.0821247931 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_003055_060 0.0823269738 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
15 Hb_000092_020 0.0829425745 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
16 Hb_001080_230 0.0834142462 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
17 Hb_001005_190 0.0848442573 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
18 Hb_001864_060 0.085312491 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
19 Hb_076693_020 0.0853314725 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
20 Hb_001838_060 0.0854573463 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001828_130 Hb_001828_130 Hb_011491_010 Hb_011491_010 Hb_001828_130--Hb_011491_010 Hb_002798_070 Hb_002798_070 Hb_001828_130--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_001828_130--Hb_000243_250 Hb_000322_150 Hb_000322_150 Hb_001828_130--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_007163_120 Hb_007163_120 Hb_011491_010--Hb_007163_120 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_002783_040 Hb_002783_040 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_002872_040 Hb_002872_040 Hb_000243_250--Hb_002872_040 Hb_000243_250--Hb_012779_090 Hb_012055_060 Hb_012055_060 Hb_000243_250--Hb_012055_060 Hb_000243_250--Hb_000092_020 Hb_076693_020 Hb_076693_020 Hb_000322_150--Hb_076693_020 Hb_000441_070 Hb_000441_070 Hb_000322_150--Hb_000441_070 Hb_000322_150--Hb_002636_100 Hb_000322_150--Hb_000092_020 Hb_000322_150--Hb_011491_010 Hb_002263_040 Hb_002263_040 Hb_002636_100--Hb_002263_040 Hb_008775_040 Hb_008775_040 Hb_002636_100--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_002636_100--Hb_000264_320 Hb_002636_100--Hb_002798_070 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_048219_010 Hb_048219_010 Hb_012564_030--Hb_048219_010 Hb_001856_230 Hb_001856_230 Hb_012564_030--Hb_001856_230 Hb_005016_160 Hb_005016_160 Hb_012564_030--Hb_005016_160 Hb_003544_110 Hb_003544_110 Hb_012564_030--Hb_003544_110 Hb_000331_670 Hb_000331_670 Hb_012564_030--Hb_000331_670 Hb_012564_030--Hb_012055_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6874 35.8003 10.7544 10.1891 15.609 18.1367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5252 17.6077 17.2001 12.2751 11.9574

CAGE analysis