Hb_001818_070

Information

Type -
Description -
Location Contig1818: 67285-78576
Sequence    

Annotation

kegg
ID rcu:RCOM_0041430
description carbon catabolite repressor protein, putative (EC:3.1.13.4)
nr
ID XP_002531170.1
description carbon catabolite repressor protein, putative [Ricinus communis]
swissprot
ID Q8W0Z9
description Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1
trembl
ID B9SYV1
description Carbon catabolite repressor protein, putative OS=Ricinus communis GN=RCOM_0041430 PE=4 SV=1
Gene Ontology
ID GO:0004519
description carbon catabolite repressor protein 4 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17691: 67504-78582 , PASA_asmbl_17692: 68137-68531
cDNA
(Sanger)
(ID:Location)		 009_H17.ab1: 78159-78582 , 044_P07.ab1: 77923-78573

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001818_070 0.0 - - carbon catabolite repressor protein, putative [Ricinus communis]
2 Hb_140506_010 0.0513617198 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
3 Hb_001838_060 0.0628232145 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
4 Hb_011491_010 0.0641775001 - - Protein YME1, putative [Ricinus communis]
5 Hb_004767_050 0.0658077559 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
6 Hb_003211_020 0.0660272701 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
7 Hb_048219_010 0.0672161257 - - coronatine-insensitive 1 [Hevea brasiliensis]
8 Hb_000331_670 0.0674878378 - - PREDICTED: protein tipD [Jatropha curcas]
9 Hb_013399_100 0.0694387588 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000049_260 0.0701429171 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_007416_180 0.0704303739 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
12 Hb_021576_110 0.0723526886 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
13 Hb_005731_030 0.0726273242 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
14 Hb_002234_170 0.0738101798 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
15 Hb_000780_230 0.074742906 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
16 Hb_015934_040 0.0749138474 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
17 Hb_001248_060 0.0751689907 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001157_040 0.0766458932 - - casein kinase, putative [Ricinus communis]
19 Hb_007163_120 0.0775276313 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
20 Hb_008500_010 0.0775331361 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]

Gene co-expression network

sample Hb_001818_070 Hb_001818_070 Hb_140506_010 Hb_140506_010 Hb_001818_070--Hb_140506_010 Hb_001838_060 Hb_001838_060 Hb_001818_070--Hb_001838_060 Hb_011491_010 Hb_011491_010 Hb_001818_070--Hb_011491_010 Hb_004767_050 Hb_004767_050 Hb_001818_070--Hb_004767_050 Hb_003211_020 Hb_003211_020 Hb_001818_070--Hb_003211_020 Hb_048219_010 Hb_048219_010 Hb_001818_070--Hb_048219_010 Hb_005541_010 Hb_005541_010 Hb_140506_010--Hb_005541_010 Hb_021576_110 Hb_021576_110 Hb_140506_010--Hb_021576_110 Hb_000049_260 Hb_000049_260 Hb_140506_010--Hb_000049_260 Hb_000125_170 Hb_000125_170 Hb_140506_010--Hb_000125_170 Hb_140506_010--Hb_004767_050 Hb_001157_040 Hb_001157_040 Hb_001838_060--Hb_001157_040 Hb_001329_160 Hb_001329_160 Hb_001838_060--Hb_001329_160 Hb_000976_310 Hb_000976_310 Hb_001838_060--Hb_000976_310 Hb_007163_120 Hb_007163_120 Hb_001838_060--Hb_007163_120 Hb_000331_670 Hb_000331_670 Hb_001838_060--Hb_000331_670 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_011491_010--Hb_007163_120 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020 Hb_004767_050--Hb_048219_010 Hb_000592_090 Hb_000592_090 Hb_004767_050--Hb_000592_090 Hb_003467_020 Hb_003467_020 Hb_004767_050--Hb_003467_020 Hb_004767_050--Hb_011491_010 Hb_003211_020--Hb_000331_670 Hb_003211_020--Hb_001838_060 Hb_003211_020--Hb_001157_040 Hb_004684_010 Hb_004684_010 Hb_003211_020--Hb_004684_010 Hb_009178_030 Hb_009178_030 Hb_003211_020--Hb_009178_030 Hb_012564_030 Hb_012564_030 Hb_048219_010--Hb_012564_030 Hb_001856_230 Hb_001856_230 Hb_048219_010--Hb_001856_230 Hb_003544_110 Hb_003544_110 Hb_048219_010--Hb_003544_110 Hb_048219_010--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.2611 58.7026 26.478 26.9168 40.801 52.5368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7659 42.1167 51.9968 29.7426 26.3626

CAGE analysis