Hb_000592_090

Information

Type -
Description -
Location Contig592: 135533-137539
Sequence    

Annotation

kegg
ID rcu:RCOM_0570830
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088542.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
swissprot
ID Q9LSK8
description Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana GN=At3g18020 PE=2 SV=1
trembl
ID A0A067JM78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27078 PE=4 SV=1
Gene Ontology
ID GO:0005319
description pentatricopeptide repeat-containing protein at3g18020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000592_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
2 Hb_004767_050 0.0711181389 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
3 Hb_076693_020 0.0882929416 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
4 Hb_004602_040 0.0891961357 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
5 Hb_000322_150 0.0906433031 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
6 Hb_093084_060 0.0960990839 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
7 Hb_074969_010 0.0981312883 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
8 Hb_000173_490 0.0982214156 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
9 Hb_009564_030 0.0991770079 transcription factor TF Family: bHLH Transcription factor AtMYC2, putative [Ricinus communis]
10 Hb_000856_310 0.1013211333 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
11 Hb_005675_040 0.1025952592 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
12 Hb_001912_100 0.1026504148 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
13 Hb_000453_060 0.1043355267 - - PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]
14 Hb_012807_050 0.1051336235 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
15 Hb_008159_020 0.1054148283 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
16 Hb_001864_060 0.1055015972 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
17 Hb_003467_020 0.1067728857 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
18 Hb_000025_340 0.1085368541 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
19 Hb_000244_220 0.1087499059 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
20 Hb_001329_160 0.1093246477 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000592_090 Hb_000592_090 Hb_004767_050 Hb_004767_050 Hb_000592_090--Hb_004767_050 Hb_076693_020 Hb_076693_020 Hb_000592_090--Hb_076693_020 Hb_004602_040 Hb_004602_040 Hb_000592_090--Hb_004602_040 Hb_000322_150 Hb_000322_150 Hb_000592_090--Hb_000322_150 Hb_093084_060 Hb_093084_060 Hb_000592_090--Hb_093084_060 Hb_074969_010 Hb_074969_010 Hb_000592_090--Hb_074969_010 Hb_048219_010 Hb_048219_010 Hb_004767_050--Hb_048219_010 Hb_001818_070 Hb_001818_070 Hb_004767_050--Hb_001818_070 Hb_003467_020 Hb_003467_020 Hb_004767_050--Hb_003467_020 Hb_011491_010 Hb_011491_010 Hb_004767_050--Hb_011491_010 Hb_140506_010 Hb_140506_010 Hb_004767_050--Hb_140506_010 Hb_076693_020--Hb_000322_150 Hb_045793_010 Hb_045793_010 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_001912_100 Hb_001912_100 Hb_004602_040--Hb_001912_100 Hb_000084_120 Hb_000084_120 Hb_004602_040--Hb_000084_120 Hb_000244_220 Hb_000244_220 Hb_004602_040--Hb_000244_220 Hb_000101_240 Hb_000101_240 Hb_004602_040--Hb_000101_240 Hb_000035_290 Hb_000035_290 Hb_004602_040--Hb_000035_290 Hb_123352_020 Hb_123352_020 Hb_004602_040--Hb_123352_020 Hb_000322_150--Hb_000441_070 Hb_002636_100 Hb_002636_100 Hb_000322_150--Hb_002636_100 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_000322_150--Hb_011491_010 Hb_001828_130 Hb_001828_130 Hb_000322_150--Hb_001828_130 Hb_002400_310 Hb_002400_310 Hb_093084_060--Hb_002400_310 Hb_181235_010 Hb_181235_010 Hb_093084_060--Hb_181235_010 Hb_000373_150 Hb_000373_150 Hb_093084_060--Hb_000373_150 Hb_000125_170 Hb_000125_170 Hb_093084_060--Hb_000125_170 Hb_000487_290 Hb_000487_290 Hb_093084_060--Hb_000487_290 Hb_004837_040 Hb_004837_040 Hb_093084_060--Hb_004837_040 Hb_000563_640 Hb_000563_640 Hb_074969_010--Hb_000563_640 Hb_002107_070 Hb_002107_070 Hb_074969_010--Hb_002107_070 Hb_000922_370 Hb_000922_370 Hb_074969_010--Hb_000922_370 Hb_000236_220 Hb_000236_220 Hb_074969_010--Hb_000236_220 Hb_001454_280 Hb_001454_280 Hb_074969_010--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_074969_010--Hb_006252_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59308 2.19434 0.626665 0.939468 1.15086 2.33244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.899243 1.59199 1.14059 1.49187 0.598187

CAGE analysis