Hb_001912_100

Information

Type -
Description -
Location Contig1912: 207218-240257
Sequence    

Annotation

kegg
ID cit:102618522
description uncharacterized LOC102618522
nr
ID XP_012075319.1
description PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
swissprot
ID P87319
description Vacuolar protein sorting-associated protein 13a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps13a PE=3 SV=2
trembl
ID A0A061G3I9
description Pleckstrin (PH) domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_015810 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar protein sorting-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19082: 207562-208729 , PASA_asmbl_19083: 208750-221681 , PASA_asmbl_19084: 221685-223637 , PASA_asmbl_19085: 224944-225277 , PASA_asmbl_19086: 225763-230601 , PASA_asmbl_19087: 230657-231102 , PASA_asmbl_19088: 231151-234847 , PASA_asmbl_19089: 236825-239390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001912_100 0.0 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
2 Hb_004602_040 0.0555110481 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
3 Hb_000030_040 0.0714996304 - - yth domain-containing protein, putative [Ricinus communis]
4 Hb_000244_220 0.074047916 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
5 Hb_000046_010 0.0818534933 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
6 Hb_003935_030 0.0827077506 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
7 Hb_000487_290 0.0829449221 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
8 Hb_000084_120 0.0857294899 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
9 Hb_000101_240 0.0866985068 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
10 Hb_003428_070 0.0875861326 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
11 Hb_000959_040 0.088896665 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
12 Hb_002477_030 0.089304603 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
13 Hb_000025_360 0.0900983644 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
14 Hb_000191_150 0.0901404546 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
15 Hb_002188_110 0.0906225391 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_006847_040 0.0920739015 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
17 Hb_005494_020 0.0944105269 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
18 Hb_123352_020 0.0948457677 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
19 Hb_001268_350 0.0967477967 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
20 Hb_006252_020 0.0969614687 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001912_100 Hb_001912_100 Hb_004602_040 Hb_004602_040 Hb_001912_100--Hb_004602_040 Hb_000030_040 Hb_000030_040 Hb_001912_100--Hb_000030_040 Hb_000244_220 Hb_000244_220 Hb_001912_100--Hb_000244_220 Hb_000046_010 Hb_000046_010 Hb_001912_100--Hb_000046_010 Hb_003935_030 Hb_003935_030 Hb_001912_100--Hb_003935_030 Hb_000487_290 Hb_000487_290 Hb_001912_100--Hb_000487_290 Hb_000084_120 Hb_000084_120 Hb_004602_040--Hb_000084_120 Hb_004602_040--Hb_000244_220 Hb_000101_240 Hb_000101_240 Hb_004602_040--Hb_000101_240 Hb_000035_290 Hb_000035_290 Hb_004602_040--Hb_000035_290 Hb_123352_020 Hb_123352_020 Hb_004602_040--Hb_123352_020 Hb_002477_030 Hb_002477_030 Hb_000030_040--Hb_002477_030 Hb_000030_040--Hb_000487_290 Hb_075481_030 Hb_075481_030 Hb_000030_040--Hb_075481_030 Hb_001790_020 Hb_001790_020 Hb_000030_040--Hb_001790_020 Hb_106371_010 Hb_106371_010 Hb_000030_040--Hb_106371_010 Hb_000856_310 Hb_000856_310 Hb_000244_220--Hb_000856_310 Hb_000244_220--Hb_000046_010 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000327_340 Hb_000327_340 Hb_000244_220--Hb_000327_340 Hb_001718_090 Hb_001718_090 Hb_000046_010--Hb_001718_090 Hb_000441_070 Hb_000441_070 Hb_000046_010--Hb_000441_070 Hb_000025_360 Hb_000025_360 Hb_000046_010--Hb_000025_360 Hb_000510_310 Hb_000510_310 Hb_000046_010--Hb_000510_310 Hb_006252_020 Hb_006252_020 Hb_000046_010--Hb_006252_020 Hb_002188_110 Hb_002188_110 Hb_000046_010--Hb_002188_110 Hb_005494_020 Hb_005494_020 Hb_003935_030--Hb_005494_020 Hb_003299_070 Hb_003299_070 Hb_003935_030--Hb_003299_070 Hb_000567_010 Hb_000567_010 Hb_003935_030--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_000768_110 Hb_000768_110 Hb_003935_030--Hb_000768_110 Hb_005188_050 Hb_005188_050 Hb_000487_290--Hb_005188_050 Hb_000487_290--Hb_123352_020 Hb_000827_070 Hb_000827_070 Hb_000487_290--Hb_000827_070 Hb_005731_030 Hb_005731_030 Hb_000487_290--Hb_005731_030 Hb_000487_290--Hb_000025_360 Hb_004724_060 Hb_004724_060 Hb_000487_290--Hb_004724_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5394 19.7753 3.60453 7.75399 19.8135 24.1532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.244 13.1453 10.7486 14.4049 7.65251

CAGE analysis