Hb_000441_070

Information

Type transcription factor
Description TF Family: C3H
Location Contig441: 72952-88825
Sequence    

Annotation

kegg
ID rcu:RCOM_1338910
description hypothetical protein
nr
ID XP_012075636.1
description PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
swissprot
ID A9LNK9
description 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
trembl
ID A0A067KFN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09230 PE=4 SV=1
Gene Ontology
ID GO:0005847
description 30-kda cleavage and polyadenylation specificity factor 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42621: 73026-88808 , PASA_asmbl_42622: 73026-74862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_070 0.0 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
2 Hb_000046_010 0.0586865648 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
3 Hb_001718_090 0.0610907781 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
4 Hb_000322_150 0.0629847323 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
5 Hb_004480_040 0.0638754252 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
6 Hb_076693_020 0.0647848924 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
7 Hb_000169_130 0.0650423219 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
8 Hb_002188_110 0.0694002408 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_000345_140 0.0702375657 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
10 Hb_000025_360 0.0704534338 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_003785_040 0.0717024622 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
12 Hb_000236_220 0.0720270159 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
13 Hb_007676_100 0.0761423127 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
14 Hb_000820_120 0.0798490696 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
15 Hb_000092_020 0.0806961083 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
16 Hb_000959_040 0.082093389 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
17 Hb_002636_100 0.0828303935 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
18 Hb_001247_070 0.0836500302 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
19 Hb_002890_090 0.0847482915 - - Auxin response factor 1 [Glycine soja]
20 Hb_045793_010 0.086535252 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000441_070 Hb_000441_070 Hb_000046_010 Hb_000046_010 Hb_000441_070--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000441_070--Hb_001718_090 Hb_000322_150 Hb_000322_150 Hb_000441_070--Hb_000322_150 Hb_004480_040 Hb_004480_040 Hb_000441_070--Hb_004480_040 Hb_076693_020 Hb_076693_020 Hb_000441_070--Hb_076693_020 Hb_000169_130 Hb_000169_130 Hb_000441_070--Hb_000169_130 Hb_000046_010--Hb_001718_090 Hb_000025_360 Hb_000025_360 Hb_000046_010--Hb_000025_360 Hb_000510_310 Hb_000510_310 Hb_000046_010--Hb_000510_310 Hb_006252_020 Hb_006252_020 Hb_000046_010--Hb_006252_020 Hb_002188_110 Hb_002188_110 Hb_000046_010--Hb_002188_110 Hb_001718_090--Hb_000025_360 Hb_001718_090--Hb_006252_020 Hb_003785_040 Hb_003785_040 Hb_001718_090--Hb_003785_040 Hb_000529_260 Hb_000529_260 Hb_001718_090--Hb_000529_260 Hb_000322_150--Hb_076693_020 Hb_002636_100 Hb_002636_100 Hb_000322_150--Hb_002636_100 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_011491_010 Hb_011491_010 Hb_000322_150--Hb_011491_010 Hb_001828_130 Hb_001828_130 Hb_000322_150--Hb_001828_130 Hb_004480_040--Hb_000169_130 Hb_000304_050 Hb_000304_050 Hb_004480_040--Hb_000304_050 Hb_000236_220 Hb_000236_220 Hb_004480_040--Hb_000236_220 Hb_000832_320 Hb_000832_320 Hb_004480_040--Hb_000832_320 Hb_000556_170 Hb_000556_170 Hb_004480_040--Hb_000556_170 Hb_045793_010 Hb_045793_010 Hb_076693_020--Hb_045793_010 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_010738_010 Hb_010738_010 Hb_000169_130--Hb_010738_010 Hb_000169_130--Hb_003785_040 Hb_065525_060 Hb_065525_060 Hb_000169_130--Hb_065525_060 Hb_003633_070 Hb_003633_070 Hb_000169_130--Hb_003633_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.446 22.8895 7.0914 5.35025 16.8094 14.9933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.57323 10.1491 10.2506 10.8273 6.7071

CAGE analysis