Hb_000832_320

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig832: 283912-292608
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21720g
description POPTRDRAFT_833831; ABC transporter family protein
nr
ID AIU41632.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9M3B9
description ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=1 SV=1
trembl
ID A0A097P9R0
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB20 PE=2 SV=1
Gene Ontology
ID GO:0016021
description p-glycoprotein 20 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59858: 288919-292731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_320 0.0 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
2 Hb_006663_040 0.0556237266 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
3 Hb_018133_050 0.0610273225 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
4 Hb_004480_040 0.0661219501 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
5 Hb_052764_060 0.0682104108 - - XPA-binding protein, putative [Ricinus communis]
6 Hb_000544_060 0.0751173948 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
7 Hb_000959_040 0.078757297 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
8 Hb_157966_010 0.0818783392 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
9 Hb_144824_010 0.0820849749 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
10 Hb_000189_100 0.0838511067 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
11 Hb_001511_110 0.0873920124 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
12 Hb_000080_170 0.08777387 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
13 Hb_000327_280 0.0883474142 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
14 Hb_004543_030 0.090095738 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
15 Hb_000304_050 0.0902420285 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_001141_370 0.0914861556 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
17 Hb_000441_070 0.0917356153 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
18 Hb_000236_220 0.0941151769 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
19 Hb_029223_050 0.0949315629 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
20 Hb_005539_090 0.0951553142 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000832_320 Hb_000832_320 Hb_006663_040 Hb_006663_040 Hb_000832_320--Hb_006663_040 Hb_018133_050 Hb_018133_050 Hb_000832_320--Hb_018133_050 Hb_004480_040 Hb_004480_040 Hb_000832_320--Hb_004480_040 Hb_052764_060 Hb_052764_060 Hb_000832_320--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000832_320--Hb_000544_060 Hb_000959_040 Hb_000959_040 Hb_000832_320--Hb_000959_040 Hb_006663_040--Hb_052764_060 Hb_006663_040--Hb_018133_050 Hb_000189_100 Hb_000189_100 Hb_006663_040--Hb_000189_100 Hb_157966_010 Hb_157966_010 Hb_006663_040--Hb_157966_010 Hb_006663_040--Hb_000544_060 Hb_018133_050--Hb_157966_010 Hb_018133_050--Hb_052764_060 Hb_018133_050--Hb_000959_040 Hb_003284_030 Hb_003284_030 Hb_018133_050--Hb_003284_030 Hb_000169_130 Hb_000169_130 Hb_004480_040--Hb_000169_130 Hb_000304_050 Hb_000304_050 Hb_004480_040--Hb_000304_050 Hb_000236_220 Hb_000236_220 Hb_004480_040--Hb_000236_220 Hb_000441_070 Hb_000441_070 Hb_004480_040--Hb_000441_070 Hb_000556_170 Hb_000556_170 Hb_004480_040--Hb_000556_170 Hb_000661_200 Hb_000661_200 Hb_052764_060--Hb_000661_200 Hb_052764_060--Hb_000544_060 Hb_052764_060--Hb_004480_040 Hb_001141_370 Hb_001141_370 Hb_000544_060--Hb_001141_370 Hb_000544_060--Hb_000661_200 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060 Hb_007676_100 Hb_007676_100 Hb_000959_040--Hb_007676_100 Hb_002188_110 Hb_002188_110 Hb_000959_040--Hb_002188_110 Hb_004718_010 Hb_004718_010 Hb_000959_040--Hb_004718_010 Hb_183963_030 Hb_183963_030 Hb_000959_040--Hb_183963_030 Hb_010578_060 Hb_010578_060 Hb_000959_040--Hb_010578_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2446 22.2125 4.01744 3.77704 12.5824 11.8439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.30363 4.58224 6.74832 7.69043 7.03722

CAGE analysis