Hb_000169_130

Information

Type -
Description -
Location Contig169: 156038-162608
Sequence    

Annotation

kegg
ID rcu:RCOM_0524670
description ATP binding protein, putative
nr
ID XP_012084802.1
description PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19920 PE=4 SV=1
Gene Ontology
ID GO:0005488
description at-rich interactive domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15700: 156648-156851 , PASA_asmbl_15702: 157396-157640 , PASA_asmbl_15704: 158795-161136 , PASA_asmbl_15705: 160186-161127 , PASA_asmbl_15708: 161686-161858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_130 0.0 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
2 Hb_004480_040 0.0596137466 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
3 Hb_010738_010 0.0625872478 - - PREDICTED: B2 protein [Jatropha curcas]
4 Hb_003785_040 0.0643996825 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
5 Hb_000441_070 0.0650423219 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
6 Hb_065525_060 0.069985993 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003633_070 0.0706725343 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
8 Hb_031527_020 0.0717873729 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
9 Hb_000556_170 0.0760974487 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
10 Hb_001718_090 0.0766901211 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
11 Hb_000820_120 0.0783315309 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
12 Hb_000418_140 0.0784795572 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
13 Hb_003373_040 0.0789449851 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
14 Hb_000236_220 0.0789474824 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
15 Hb_032202_110 0.0791101172 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_002615_090 0.0791500195 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
17 Hb_111198_010 0.0794218932 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
18 Hb_000032_010 0.0796239152 - - crooked neck protein, putative [Ricinus communis]
19 Hb_001143_250 0.0799067149 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
20 Hb_000139_090 0.0810315356 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_130 Hb_000169_130 Hb_004480_040 Hb_004480_040 Hb_000169_130--Hb_004480_040 Hb_010738_010 Hb_010738_010 Hb_000169_130--Hb_010738_010 Hb_003785_040 Hb_003785_040 Hb_000169_130--Hb_003785_040 Hb_000441_070 Hb_000441_070 Hb_000169_130--Hb_000441_070 Hb_065525_060 Hb_065525_060 Hb_000169_130--Hb_065525_060 Hb_003633_070 Hb_003633_070 Hb_000169_130--Hb_003633_070 Hb_000304_050 Hb_000304_050 Hb_004480_040--Hb_000304_050 Hb_000236_220 Hb_000236_220 Hb_004480_040--Hb_000236_220 Hb_004480_040--Hb_000441_070 Hb_000832_320 Hb_000832_320 Hb_004480_040--Hb_000832_320 Hb_000556_170 Hb_000556_170 Hb_004480_040--Hb_000556_170 Hb_032202_110 Hb_032202_110 Hb_010738_010--Hb_032202_110 Hb_005883_010 Hb_005883_010 Hb_010738_010--Hb_005883_010 Hb_111198_010 Hb_111198_010 Hb_010738_010--Hb_111198_010 Hb_000103_100 Hb_000103_100 Hb_010738_010--Hb_000103_100 Hb_000283_130 Hb_000283_130 Hb_010738_010--Hb_000283_130 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_000046_010 Hb_000046_010 Hb_000441_070--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000441_070--Hb_001718_090 Hb_000322_150 Hb_000322_150 Hb_000441_070--Hb_000322_150 Hb_076693_020 Hb_076693_020 Hb_000441_070--Hb_076693_020 Hb_003373_040 Hb_003373_040 Hb_065525_060--Hb_003373_040 Hb_000152_340 Hb_000152_340 Hb_065525_060--Hb_000152_340 Hb_065525_060--Hb_000556_170 Hb_065525_060--Hb_031527_020 Hb_065525_060--Hb_000236_220 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00662 8.45641 3.78908 2.33296 6.44859 5.50306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00433 3.10656 4.34046 3.75638 2.7912

CAGE analysis