Hb_003373_040

Information

Type -
Description -
Location Contig3373: 56342-58391
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_356474
description hypothetical protein
nr
ID XP_002863484.1
description hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
swissprot
ID -
description -
trembl
ID M1AHH0
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008887 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase atg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003373_040 0.0 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
2 Hb_093084_070 0.0436315272 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
3 Hb_000236_220 0.0561166203 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
4 Hb_004109_030 0.0683996155 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000070_080 0.0700263276 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
6 Hb_008103_060 0.074737872 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
7 Hb_002078_220 0.0767804029 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
8 Hb_002890_090 0.0785554383 - - Auxin response factor 1 [Glycine soja]
9 Hb_000169_130 0.0789449851 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_002043_140 0.0807849904 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
11 Hb_065525_060 0.0809677717 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009780_100 0.0817552949 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
13 Hb_155396_010 0.0824350382 - - TMV resistance protein N, putative [Ricinus communis]
14 Hb_000140_070 0.0828189184 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
15 Hb_000780_170 0.084030081 - - PREDICTED: OBERON-like protein [Jatropha curcas]
16 Hb_000479_220 0.0844290655 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
17 Hb_000061_490 0.0853395292 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
18 Hb_000322_150 0.0859070702 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
19 Hb_000162_280 0.0868563951 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
20 Hb_008511_090 0.0871247929 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]

Gene co-expression network

sample Hb_003373_040 Hb_003373_040 Hb_093084_070 Hb_093084_070 Hb_003373_040--Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_003373_040--Hb_000236_220 Hb_004109_030 Hb_004109_030 Hb_003373_040--Hb_004109_030 Hb_000070_080 Hb_000070_080 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_002078_220 Hb_002078_220 Hb_003373_040--Hb_002078_220 Hb_093084_070--Hb_000236_220 Hb_000236_410 Hb_000236_410 Hb_093084_070--Hb_000236_410 Hb_001055_030 Hb_001055_030 Hb_093084_070--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_093084_070--Hb_000061_490 Hb_074969_010 Hb_074969_010 Hb_093084_070--Hb_074969_010 Hb_004480_040 Hb_004480_040 Hb_000236_220--Hb_004480_040 Hb_005260_010 Hb_005260_010 Hb_000236_220--Hb_005260_010 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070 Hb_008511_090 Hb_008511_090 Hb_004109_030--Hb_008511_090 Hb_003082_010 Hb_003082_010 Hb_004109_030--Hb_003082_010 Hb_002890_090 Hb_002890_090 Hb_004109_030--Hb_002890_090 Hb_004109_030--Hb_000070_080 Hb_000941_130 Hb_000941_130 Hb_004109_030--Hb_000941_130 Hb_000070_080--Hb_008511_090 Hb_000070_080--Hb_008103_060 Hb_000479_220 Hb_000479_220 Hb_000070_080--Hb_000479_220 Hb_000162_280 Hb_000162_280 Hb_000070_080--Hb_000162_280 Hb_002078_110 Hb_002078_110 Hb_000070_080--Hb_002078_110 Hb_000070_080--Hb_002078_220 Hb_140049_040 Hb_140049_040 Hb_008103_060--Hb_140049_040 Hb_007635_030 Hb_007635_030 Hb_008103_060--Hb_007635_030 Hb_004195_200 Hb_004195_200 Hb_008103_060--Hb_004195_200 Hb_002876_130 Hb_002876_130 Hb_008103_060--Hb_002876_130 Hb_002043_140 Hb_002043_140 Hb_008103_060--Hb_002043_140 Hb_000886_050 Hb_000886_050 Hb_002078_220--Hb_000886_050 Hb_000076_160 Hb_000076_160 Hb_002078_220--Hb_000076_160 Hb_002078_220--Hb_008511_090 Hb_002078_220--Hb_008103_060 Hb_002078_220--Hb_002876_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1998 20.2962 6.74392 8.45488 11.6297 11.2882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.49624 6.8099 8.22249 7.79181 4.09179

CAGE analysis