Hb_001055_030

Information

Type -
Description -
Location Contig1055: 79015-97023
Sequence    

Annotation

kegg
ID cic:CICLE_v10025249mg
description hypothetical protein
nr
ID XP_012073109.1
description PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
swissprot
ID Q8BID8
description F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1
trembl
ID A0A067KPT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06089 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01843: 87184-87378 , PASA_asmbl_01844: 78887-97031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001055_030 0.0 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
2 Hb_007894_130 0.0723972045 - - hypothetical protein RCOM_0584960 [Ricinus communis]
3 Hb_000236_410 0.074970592 - - Paramyosin, putative [Ricinus communis]
4 Hb_093084_070 0.0816381512 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
5 Hb_008143_070 0.0845970056 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
6 Hb_000009_330 0.0939782356 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
7 Hb_000622_250 0.0942421074 - - atpob1, putative [Ricinus communis]
8 Hb_000236_220 0.0948712974 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
9 Hb_010712_090 0.0970063539 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
10 Hb_003211_010 0.0993941129 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
11 Hb_000059_020 0.1014816089 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
12 Hb_000627_180 0.1025404079 - - conserved hypothetical protein [Ricinus communis]
13 Hb_032808_030 0.1025602225 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_003373_040 0.1039705277 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
15 Hb_005260_010 0.1062282767 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
16 Hb_156850_070 0.1068644425 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000932_070 0.1079963789 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
18 Hb_000856_180 0.1100332435 - - calcium-dependent protein kinase [Hevea brasiliensis]
19 Hb_000768_180 0.1100815839 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
20 Hb_000940_200 0.1112922097 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]

Gene co-expression network

sample Hb_001055_030 Hb_001055_030 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_000236_410 Hb_000236_410 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_008143_070 Hb_008143_070 Hb_001055_030--Hb_008143_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_000622_250 Hb_000622_250 Hb_001055_030--Hb_000622_250 Hb_000061_490 Hb_000061_490 Hb_007894_130--Hb_000061_490 Hb_000780_170 Hb_000780_170 Hb_007894_130--Hb_000780_170 Hb_005260_010 Hb_005260_010 Hb_007894_130--Hb_005260_010 Hb_000768_180 Hb_000768_180 Hb_007894_130--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_007894_130--Hb_000236_220 Hb_032808_030 Hb_032808_030 Hb_000236_410--Hb_032808_030 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001935_140 Hb_001935_140 Hb_000236_410--Hb_001935_140 Hb_093084_070--Hb_000236_220 Hb_003373_040 Hb_003373_040 Hb_093084_070--Hb_003373_040 Hb_093084_070--Hb_000061_490 Hb_074969_010 Hb_074969_010 Hb_093084_070--Hb_074969_010 Hb_008143_070--Hb_000622_250 Hb_005143_030 Hb_005143_030 Hb_008143_070--Hb_005143_030 Hb_003498_120 Hb_003498_120 Hb_008143_070--Hb_003498_120 Hb_001318_020 Hb_001318_020 Hb_008143_070--Hb_001318_020 Hb_004668_060 Hb_004668_060 Hb_008143_070--Hb_004668_060 Hb_000059_020 Hb_000059_020 Hb_000009_330--Hb_000059_020 Hb_004994_090 Hb_004994_090 Hb_000009_330--Hb_004994_090 Hb_000169_170 Hb_000169_170 Hb_000009_330--Hb_000169_170 Hb_000862_040 Hb_000862_040 Hb_000009_330--Hb_000862_040 Hb_000009_330--Hb_000236_410 Hb_007054_040 Hb_007054_040 Hb_000009_330--Hb_007054_040 Hb_157966_010 Hb_157966_010 Hb_000622_250--Hb_157966_010 Hb_004659_080 Hb_004659_080 Hb_000622_250--Hb_004659_080 Hb_000622_250--Hb_000236_220 Hb_000622_250--Hb_005260_010 Hb_000627_180 Hb_000627_180 Hb_000622_250--Hb_000627_180 Hb_006252_020 Hb_006252_020 Hb_000622_250--Hb_006252_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6217 27.0492 5.97877 14.0913 13.3858 13.0081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.89512 6.25144 6.0162 14.739 4.12435

CAGE analysis