Hb_000059_020

Information

Type -
Description -
Location Contig59: 22899-26476
Sequence    

Annotation

kegg
ID rcu:RCOM_0559620
description F-box/LRR-repeat protein, putative
nr
ID XP_012066111.1
description PREDICTED: F-box protein SKP2A [Jatropha curcas]
swissprot
ID Q9LPL4
description F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1
trembl
ID A0A067L758
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25269 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50152: 24331-24866 , PASA_asmbl_50153: 23764-24272 , PASA_asmbl_50154: 22933-26420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_020 0.0 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
2 Hb_000862_040 0.0691949458 - - ara4-interacting protein, putative [Ricinus communis]
3 Hb_000940_200 0.0708684763 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
4 Hb_005568_040 0.0738908856 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
5 Hb_000700_060 0.0740511769 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
6 Hb_000197_030 0.0770321923 - - hypothetical protein RCOM_1447500 [Ricinus communis]
7 Hb_000009_330 0.07758078 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
8 Hb_000479_240 0.077819756 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
9 Hb_000069_130 0.0787706076 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
10 Hb_004785_030 0.0788959667 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
11 Hb_004994_090 0.0790345403 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
12 Hb_007054_040 0.0812044473 - - PREDICTED: protein RST1 [Jatropha curcas]
13 Hb_001935_140 0.0816415666 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
14 Hb_002119_090 0.0820516469 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
15 Hb_008948_140 0.0831549114 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
16 Hb_000406_110 0.0853380842 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
17 Hb_002284_170 0.0865466907 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
18 Hb_004586_290 0.0878766806 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
19 Hb_000631_120 0.0880394275 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
20 Hb_001257_100 0.088273189 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000059_020 Hb_000059_020 Hb_000862_040 Hb_000862_040 Hb_000059_020--Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330 Hb_000862_040--Hb_000940_200 Hb_005542_140 Hb_005542_140 Hb_000862_040--Hb_005542_140 Hb_001935_140 Hb_001935_140 Hb_000862_040--Hb_001935_140 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_000631_120 Hb_000631_120 Hb_000940_200--Hb_000631_120 Hb_001205_200 Hb_001205_200 Hb_000940_200--Hb_001205_200 Hb_000363_120 Hb_000363_120 Hb_000940_200--Hb_000363_120 Hb_003866_080 Hb_003866_080 Hb_000940_200--Hb_003866_080 Hb_000479_240 Hb_000479_240 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_000331_580 Hb_000331_580 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_002119_090 Hb_002119_090 Hb_000700_060--Hb_002119_090 Hb_004785_030 Hb_004785_030 Hb_000700_060--Hb_004785_030 Hb_006738_050 Hb_006738_050 Hb_000700_060--Hb_006738_050 Hb_002284_170 Hb_002284_170 Hb_000700_060--Hb_002284_170 Hb_004410_070 Hb_004410_070 Hb_000700_060--Hb_004410_070 Hb_000418_010 Hb_000418_010 Hb_000197_030--Hb_000418_010 Hb_001489_100 Hb_001489_100 Hb_000197_030--Hb_001489_100 Hb_026198_060 Hb_026198_060 Hb_000197_030--Hb_026198_060 Hb_000197_030--Hb_002119_090 Hb_006198_020 Hb_006198_020 Hb_000197_030--Hb_006198_020 Hb_004994_090 Hb_004994_090 Hb_000009_330--Hb_004994_090 Hb_000169_170 Hb_000169_170 Hb_000009_330--Hb_000169_170 Hb_000009_330--Hb_000862_040 Hb_000236_410 Hb_000236_410 Hb_000009_330--Hb_000236_410 Hb_007054_040 Hb_007054_040 Hb_000009_330--Hb_007054_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2934 55.8585 21.4111 30.8717 20.1484 24.6042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8183 12.1487 11.3648 32.377 16.4937

CAGE analysis