Hb_006198_020

Information

Type -
Description -
Location Contig6198: 11651-16857
Sequence    

Annotation

kegg
ID rcu:RCOM_1721320
description hypothetical protein
nr
ID XP_012085143.1
description PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S551
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1721320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51362: 12615-13006 , PASA_asmbl_51363: 13027-13293 , PASA_asmbl_51365: 14210-14586 , PASA_asmbl_51366: 14592-16973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_020 0.0 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
2 Hb_000197_030 0.0877479758 - - hypothetical protein RCOM_1447500 [Ricinus communis]
3 Hb_005015_080 0.087965013 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
4 Hb_000418_010 0.0888590112 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
5 Hb_000059_020 0.0953988816 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
6 Hb_000069_130 0.0961661087 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
7 Hb_000940_200 0.0975859177 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
8 Hb_001205_200 0.0992153856 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006738_050 0.10153691 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
10 Hb_155396_010 0.1017639903 - - TMV resistance protein N, putative [Ricinus communis]
11 Hb_001489_100 0.1024280013 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
12 Hb_002071_050 0.1027731809 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
13 Hb_007894_130 0.1030058916 - - hypothetical protein RCOM_0584960 [Ricinus communis]
14 Hb_000205_240 0.1040575192 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000402_230 0.1065179634 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
16 Hb_009627_030 0.1065471915 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
17 Hb_007850_090 0.1070093176 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
18 Hb_008253_020 0.1073069885 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
19 Hb_000487_380 0.1076582442 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
20 Hb_000780_170 0.1081580107 - - PREDICTED: OBERON-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_006198_020 Hb_006198_020 Hb_000197_030 Hb_000197_030 Hb_006198_020--Hb_000197_030 Hb_005015_080 Hb_005015_080 Hb_006198_020--Hb_005015_080 Hb_000418_010 Hb_000418_010 Hb_006198_020--Hb_000418_010 Hb_000059_020 Hb_000059_020 Hb_006198_020--Hb_000059_020 Hb_000069_130 Hb_000069_130 Hb_006198_020--Hb_000069_130 Hb_000940_200 Hb_000940_200 Hb_006198_020--Hb_000940_200 Hb_000197_030--Hb_000418_010 Hb_000197_030--Hb_000059_020 Hb_001489_100 Hb_001489_100 Hb_000197_030--Hb_001489_100 Hb_026198_060 Hb_026198_060 Hb_000197_030--Hb_026198_060 Hb_002119_090 Hb_002119_090 Hb_000197_030--Hb_002119_090 Hb_009545_090 Hb_009545_090 Hb_005015_080--Hb_009545_090 Hb_003398_080 Hb_003398_080 Hb_005015_080--Hb_003398_080 Hb_003175_030 Hb_003175_030 Hb_005015_080--Hb_003175_030 Hb_000815_240 Hb_000815_240 Hb_005015_080--Hb_000815_240 Hb_021443_090 Hb_021443_090 Hb_005015_080--Hb_021443_090 Hb_000069_480 Hb_000069_480 Hb_000418_010--Hb_000069_480 Hb_000671_080 Hb_000671_080 Hb_000418_010--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_000418_010--Hb_001257_100 Hb_000418_010--Hb_001489_100 Hb_000862_040 Hb_000862_040 Hb_000059_020--Hb_000862_040 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330 Hb_003912_040 Hb_003912_040 Hb_000069_130--Hb_003912_040 Hb_000402_230 Hb_000402_230 Hb_000069_130--Hb_000402_230 Hb_000809_160 Hb_000809_160 Hb_000069_130--Hb_000809_160 Hb_001089_050 Hb_001089_050 Hb_000069_130--Hb_001089_050 Hb_002374_290 Hb_002374_290 Hb_000069_130--Hb_002374_290 Hb_002542_130 Hb_002542_130 Hb_000069_130--Hb_002542_130 Hb_000940_200--Hb_000862_040 Hb_000631_120 Hb_000631_120 Hb_000940_200--Hb_000631_120 Hb_001205_200 Hb_001205_200 Hb_000940_200--Hb_001205_200 Hb_000363_120 Hb_000363_120 Hb_000940_200--Hb_000363_120 Hb_003866_080 Hb_003866_080 Hb_000940_200--Hb_003866_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5598 41.3699 15.8392 28.3505 11.5687 21.2048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.633 12.0351 11.3107 15.2602 8.57963

CAGE analysis