Hb_000940_200

Information

Type -
Description -
Location Contig940: 277091-285019
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13260g
description POPTRDRAFT_767318; hypothetical protein
nr
ID XP_012084375.1
description PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HRA5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13260g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63150: 265913-278445 , PASA_asmbl_63151: 278471-282707 , PASA_asmbl_63152: 282710-283188 , PASA_asmbl_63153: 283450-283628 , PASA_asmbl_63154: 283781-284953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_200 0.0 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
2 Hb_000862_040 0.0536061139 - - ara4-interacting protein, putative [Ricinus communis]
3 Hb_000631_120 0.0616600247 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
4 Hb_001205_200 0.068395779 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000363_120 0.0691968068 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
6 Hb_000059_020 0.0708684763 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
7 Hb_003866_080 0.0739845315 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
8 Hb_031641_010 0.0759941895 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000069_130 0.076136726 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
10 Hb_005389_160 0.0763861926 - - PREDICTED: casein kinase I [Jatropha curcas]
11 Hb_002325_040 0.0769396253 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
12 Hb_000139_320 0.0771791807 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
13 Hb_184798_080 0.0772059574 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
14 Hb_000340_030 0.0796859603 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
15 Hb_008160_030 0.0802829982 - - DNA binding protein, putative [Ricinus communis]
16 Hb_004410_070 0.0808337439 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
17 Hb_000402_230 0.0813193606 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
18 Hb_001723_010 0.0819063025 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
19 Hb_004143_100 0.0819080151 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000700_060 0.0831511581 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]

Gene co-expression network

sample Hb_000940_200 Hb_000940_200 Hb_000862_040 Hb_000862_040 Hb_000940_200--Hb_000862_040 Hb_000631_120 Hb_000631_120 Hb_000940_200--Hb_000631_120 Hb_001205_200 Hb_001205_200 Hb_000940_200--Hb_001205_200 Hb_000363_120 Hb_000363_120 Hb_000940_200--Hb_000363_120 Hb_000059_020 Hb_000059_020 Hb_000940_200--Hb_000059_020 Hb_003866_080 Hb_003866_080 Hb_000940_200--Hb_003866_080 Hb_005542_140 Hb_005542_140 Hb_000862_040--Hb_005542_140 Hb_000862_040--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_000862_040--Hb_001935_140 Hb_005568_040 Hb_005568_040 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_000631_120--Hb_000862_040 Hb_007054_040 Hb_007054_040 Hb_000631_120--Hb_007054_040 Hb_000631_120--Hb_001935_140 Hb_000631_120--Hb_000363_120 Hb_001862_110 Hb_001862_110 Hb_000631_120--Hb_001862_110 Hb_000087_060 Hb_000087_060 Hb_001205_200--Hb_000087_060 Hb_004143_100 Hb_004143_100 Hb_001205_200--Hb_004143_100 Hb_000076_160 Hb_000076_160 Hb_001205_200--Hb_000076_160 Hb_000402_230 Hb_000402_230 Hb_001205_200--Hb_000402_230 Hb_000358_230 Hb_000358_230 Hb_001205_200--Hb_000358_230 Hb_001205_200--Hb_003866_080 Hb_000094_090 Hb_000094_090 Hb_000363_120--Hb_000094_090 Hb_000809_160 Hb_000809_160 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_000363_120--Hb_000340_030 Hb_004899_040 Hb_004899_040 Hb_000363_120--Hb_004899_040 Hb_001545_150 Hb_001545_150 Hb_000363_120--Hb_001545_150 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330 Hb_001089_050 Hb_001089_050 Hb_003866_080--Hb_001089_050 Hb_003866_080--Hb_000402_230 Hb_003866_080--Hb_004143_100 Hb_001767_140 Hb_001767_140 Hb_003866_080--Hb_001767_140 Hb_002085_030 Hb_002085_030 Hb_003866_080--Hb_002085_030 Hb_002492_010 Hb_002492_010 Hb_003866_080--Hb_002492_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.16933 14.404 7.16325 7.95607 6.23634 6.89893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72595 5.61147 4.20459 9.20161 4.06359

CAGE analysis