Hb_004899_040

Information

Type transcription factor
Description TF Family: ARF
Location Contig4899: 16862-24959
Sequence    

Annotation

kegg
ID mtr:MTR_4g124900
description Auxin response factor
nr
ID XP_003609970.1
description Auxin response factor [Medicago truncatula]
swissprot
ID Q8RYC8
description Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2
trembl
ID G7JS69
description Auxin response factor OS=Medicago truncatula GN=MTR_4g124900 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 19-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45184: 16781-25096 , PASA_asmbl_45185: 23994-24149 , PASA_asmbl_45186: 17770-17971 , PASA_asmbl_45188: 20262-20579 , PASA_asmbl_45189: 25177-25278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_040 0.0 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
2 Hb_011249_060 0.0646775772 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
3 Hb_000363_120 0.0652018597 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
4 Hb_009302_030 0.0691165816 - - hypothetical protein RCOM_1176340 [Ricinus communis]
5 Hb_000094_090 0.0710169044 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
6 Hb_000649_250 0.0730541721 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
7 Hb_000703_200 0.0756898572 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
8 Hb_001545_150 0.0771842222 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
9 Hb_000479_070 0.0777651679 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_000130_280 0.0783692966 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_003918_030 0.0799366928 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
12 Hb_009486_160 0.0800249311 - - PREDICTED: metacaspase-1 [Jatropha curcas]
13 Hb_000373_100 0.0806800484 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
14 Hb_001427_150 0.0813435213 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
15 Hb_026198_060 0.0822289301 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
16 Hb_005389_160 0.0826246444 - - PREDICTED: casein kinase I [Jatropha curcas]
17 Hb_006738_050 0.0849459361 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
18 Hb_005188_040 0.0859253704 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
19 Hb_020805_150 0.0867841632 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_002928_190 0.0869222796 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]

Gene co-expression network

sample Hb_004899_040 Hb_004899_040 Hb_011249_060 Hb_011249_060 Hb_004899_040--Hb_011249_060 Hb_000363_120 Hb_000363_120 Hb_004899_040--Hb_000363_120 Hb_009302_030 Hb_009302_030 Hb_004899_040--Hb_009302_030 Hb_000094_090 Hb_000094_090 Hb_004899_040--Hb_000094_090 Hb_000649_250 Hb_000649_250 Hb_004899_040--Hb_000649_250 Hb_000703_200 Hb_000703_200 Hb_004899_040--Hb_000703_200 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_011249_060--Hb_009302_030 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100 Hb_000363_120--Hb_000094_090 Hb_000809_160 Hb_000809_160 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_000363_120--Hb_000340_030 Hb_001545_150 Hb_001545_150 Hb_000363_120--Hb_001545_150 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_000094_090--Hb_000809_160 Hb_000723_110 Hb_000723_110 Hb_000094_090--Hb_000723_110 Hb_000373_230 Hb_000373_230 Hb_000094_090--Hb_000373_230 Hb_023226_070 Hb_023226_070 Hb_000094_090--Hb_023226_070 Hb_004870_050 Hb_004870_050 Hb_000094_090--Hb_004870_050 Hb_003918_030 Hb_003918_030 Hb_000649_250--Hb_003918_030 Hb_026198_060 Hb_026198_060 Hb_000649_250--Hb_026198_060 Hb_022425_060 Hb_022425_060 Hb_000649_250--Hb_022425_060 Hb_004517_020 Hb_004517_020 Hb_000649_250--Hb_004517_020 Hb_001257_100 Hb_001257_100 Hb_000649_250--Hb_001257_100 Hb_000024_040 Hb_000024_040 Hb_000703_200--Hb_000024_040 Hb_007426_060 Hb_007426_060 Hb_000703_200--Hb_007426_060 Hb_000703_200--Hb_001545_150 Hb_001723_010 Hb_001723_010 Hb_000703_200--Hb_001723_010 Hb_000703_200--Hb_004517_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.986 46.1768 21.672 17.9878 11.0025 12.7315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.43083 11.9308 12.4507 16.918 17.8875

CAGE analysis