Hb_000373_230

Information

Type transcription factor
Description TF Family: TUB
Location Contig373: 302863-307613
Sequence    

Annotation

kegg
ID rcu:RCOM_0959040
description phosphoric diester hydrolase, putative
nr
ID XP_002524285.1
description phosphoric diester hydrolase, putative [Ricinus communis]
swissprot
ID Q75HX5
description Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1
trembl
ID B9SE66
description Tubby-like F-box protein OS=Ricinus communis GN=RCOM_0959040 PE=3 SV=1
Gene Ontology
ID GO:0005515
description tubby-like f-box protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38139: 303004-307569 , PASA_asmbl_38140: 303017-303248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_230 0.0 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
2 Hb_000915_060 0.062296236 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
3 Hb_000094_090 0.0639647354 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
4 Hb_000723_110 0.0646780452 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
5 Hb_001410_020 0.0672472042 - - cdk8, putative [Ricinus communis]
6 Hb_000363_120 0.0733019348 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
7 Hb_000809_160 0.0762233186 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
8 Hb_023226_070 0.0791551593 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003849_140 0.0817945387 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
10 Hb_004410_070 0.0830741302 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
11 Hb_001300_010 0.0836828893 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
12 Hb_003398_080 0.0840848434 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
13 Hb_060094_020 0.0842298865 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
14 Hb_004870_050 0.0844828802 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
15 Hb_005834_040 0.0851499056 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
16 Hb_004032_230 0.0854196555 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
17 Hb_007017_070 0.0859383878 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
18 Hb_001723_010 0.087898939 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
19 Hb_000809_170 0.087927226 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
20 Hb_000120_910 0.0886514766 - - plant ubiquilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000373_230 Hb_000373_230 Hb_000915_060 Hb_000915_060 Hb_000373_230--Hb_000915_060 Hb_000094_090 Hb_000094_090 Hb_000373_230--Hb_000094_090 Hb_000723_110 Hb_000723_110 Hb_000373_230--Hb_000723_110 Hb_001410_020 Hb_001410_020 Hb_000373_230--Hb_001410_020 Hb_000363_120 Hb_000363_120 Hb_000373_230--Hb_000363_120 Hb_000809_160 Hb_000809_160 Hb_000373_230--Hb_000809_160 Hb_003849_140 Hb_003849_140 Hb_000915_060--Hb_003849_140 Hb_001277_020 Hb_001277_020 Hb_000915_060--Hb_001277_020 Hb_000915_060--Hb_000723_110 Hb_000915_060--Hb_001410_020 Hb_000236_470 Hb_000236_470 Hb_000915_060--Hb_000236_470 Hb_000094_090--Hb_000363_120 Hb_000094_090--Hb_000809_160 Hb_000094_090--Hb_000723_110 Hb_023226_070 Hb_023226_070 Hb_000094_090--Hb_023226_070 Hb_004870_050 Hb_004870_050 Hb_000094_090--Hb_004870_050 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000260_180 Hb_000260_180 Hb_001410_020--Hb_000260_180 Hb_162275_050 Hb_162275_050 Hb_001410_020--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_001410_020--Hb_012779_090 Hb_006588_210 Hb_006588_210 Hb_001410_020--Hb_006588_210 Hb_000025_730 Hb_000025_730 Hb_001410_020--Hb_000025_730 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_000363_120--Hb_000340_030 Hb_004899_040 Hb_004899_040 Hb_000363_120--Hb_004899_040 Hb_001545_150 Hb_001545_150 Hb_000363_120--Hb_001545_150 Hb_002477_250 Hb_002477_250 Hb_000809_160--Hb_002477_250 Hb_000809_160--Hb_031641_010 Hb_000866_450 Hb_000866_450 Hb_000809_160--Hb_000866_450 Hb_000120_910 Hb_000120_910 Hb_000809_160--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3999 63.216 43.8529 25.288 34.2886 20.5676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9167 22.4275 26.2436 26.5488 22.0472

CAGE analysis