Hb_001277_020

Information

Type -
Description -
Location Contig1277: 62019-65312
Sequence    

Annotation

kegg
ID tcc:TCM_020741
description ARM repeat superfamily protein
nr
ID XP_012069739.1
description PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
swissprot
ID Q9LS90
description Armadillo repeat-containing protein LFR OS=Arabidopsis thaliana GN=LFR PE=2 SV=1
trembl
ID A0A067KVQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02259 PE=4 SV=1
Gene Ontology
ID GO:0005634
description armadillo repeat-containing protein lfr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08459: 62030-65314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_020 0.0 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
2 Hb_001430_080 0.0545997373 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
3 Hb_000236_470 0.056736097 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
4 Hb_140049_040 0.0593794042 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
5 Hb_008147_040 0.0593795627 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
6 Hb_000099_040 0.0644932476 - - unnamed protein product [Coffea canephora]
7 Hb_000011_100 0.0660927169 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
8 Hb_002876_130 0.0669271642 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
9 Hb_000174_060 0.068092363 - - zinc finger family protein [Populus trichocarpa]
10 Hb_000915_060 0.0694691564 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
11 Hb_004976_010 0.0699727329 - - hypothetical protein RCOM_1429110 [Ricinus communis]
12 Hb_000243_210 0.0710829453 - - protein with unknown function [Ricinus communis]
13 Hb_000398_080 0.0718355639 - - tip120, putative [Ricinus communis]
14 Hb_000640_310 0.0727531094 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
15 Hb_003835_070 0.0742298346 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
16 Hb_154580_010 0.074780741 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
17 Hb_001636_050 0.0749410033 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
18 Hb_000645_170 0.0749755892 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001668_010 0.075113812 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
20 Hb_004267_040 0.0752848358 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]

Gene co-expression network

sample Hb_001277_020 Hb_001277_020 Hb_001430_080 Hb_001430_080 Hb_001277_020--Hb_001430_080 Hb_000236_470 Hb_000236_470 Hb_001277_020--Hb_000236_470 Hb_140049_040 Hb_140049_040 Hb_001277_020--Hb_140049_040 Hb_008147_040 Hb_008147_040 Hb_001277_020--Hb_008147_040 Hb_000099_040 Hb_000099_040 Hb_001277_020--Hb_000099_040 Hb_000011_100 Hb_000011_100 Hb_001277_020--Hb_000011_100 Hb_001430_080--Hb_000011_100 Hb_004976_010 Hb_004976_010 Hb_001430_080--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001430_080--Hb_000645_170 Hb_003835_070 Hb_003835_070 Hb_001430_080--Hb_003835_070 Hb_000879_040 Hb_000879_040 Hb_001430_080--Hb_000879_040 Hb_000640_310 Hb_000640_310 Hb_000236_470--Hb_000640_310 Hb_002701_150 Hb_002701_150 Hb_000236_470--Hb_002701_150 Hb_001047_200 Hb_001047_200 Hb_000236_470--Hb_001047_200 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_000556_170 Hb_000556_170 Hb_000236_470--Hb_000556_170 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_000664_070 Hb_000664_070 Hb_008147_040--Hb_000664_070 Hb_154114_010 Hb_154114_010 Hb_008147_040--Hb_154114_010 Hb_008147_040--Hb_000556_170 Hb_008147_040--Hb_000640_310 Hb_000594_040 Hb_000594_040 Hb_008147_040--Hb_000594_040 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_000243_210 Hb_000243_210 Hb_000099_040--Hb_000243_210 Hb_001673_050 Hb_001673_050 Hb_000099_040--Hb_001673_050 Hb_001318_070 Hb_001318_070 Hb_000099_040--Hb_001318_070 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210 Hb_004267_040 Hb_004267_040 Hb_000011_100--Hb_004267_040 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_000398_080 Hb_000398_080 Hb_000011_100--Hb_000398_080 Hb_000120_280 Hb_000120_280 Hb_000011_100--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_000011_100--Hb_000563_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8257 33.7315 25.8048 15.272 29.6003 19.2041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3353 14.7005 14.1702 24.2471 17.8429

CAGE analysis