Hb_002701_150

Information

Type -
Description -
Location Contig2701: 146126-152075
Sequence    

Annotation

kegg
ID pop:POPTR_0004s11710g
description POPTRDRAFT_1076440; hypothetical protein
nr
ID XP_012088060.1
description PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9SRU7
description Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3
trembl
ID A0A067JND0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25589 PE=4 SV=1
Gene Ontology
ID GO:0003723
description probable trna (guanine -n )-dimethyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28332: 146128-147873 , PASA_asmbl_28333: 147914-148763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_150 0.0 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
2 Hb_000236_470 0.0576448919 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
3 Hb_000836_410 0.0592005671 - - sec10, putative [Ricinus communis]
4 Hb_001636_050 0.0681410753 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
5 Hb_000679_340 0.0700298638 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
6 Hb_000230_090 0.0706363239 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
7 Hb_012565_050 0.0716733894 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
8 Hb_000523_080 0.0726663463 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
9 Hb_007929_080 0.0729081046 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
10 Hb_002027_060 0.0746384559 - - PREDICTED: exosome complex component RRP4 [Jatropha curcas]
11 Hb_154580_010 0.075815579 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
12 Hb_004976_010 0.0765859771 - - hypothetical protein RCOM_1429110 [Ricinus communis]
13 Hb_003638_090 0.076880184 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
14 Hb_000390_230 0.0776739325 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
15 Hb_002067_030 0.0786047662 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
16 Hb_140049_040 0.078817428 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
17 Hb_008887_020 0.0803064662 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
18 Hb_000960_050 0.0822678571 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
19 Hb_000914_120 0.0826670047 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
20 Hb_008568_020 0.0828812328 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_002701_150 Hb_002701_150 Hb_000236_470 Hb_000236_470 Hb_002701_150--Hb_000236_470 Hb_000836_410 Hb_000836_410 Hb_002701_150--Hb_000836_410 Hb_001636_050 Hb_001636_050 Hb_002701_150--Hb_001636_050 Hb_000679_340 Hb_000679_340 Hb_002701_150--Hb_000679_340 Hb_000230_090 Hb_000230_090 Hb_002701_150--Hb_000230_090 Hb_012565_050 Hb_012565_050 Hb_002701_150--Hb_012565_050 Hb_001277_020 Hb_001277_020 Hb_000236_470--Hb_001277_020 Hb_000640_310 Hb_000640_310 Hb_000236_470--Hb_000640_310 Hb_001047_200 Hb_001047_200 Hb_000236_470--Hb_001047_200 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_000556_170 Hb_000556_170 Hb_000236_470--Hb_000556_170 Hb_000390_230 Hb_000390_230 Hb_000836_410--Hb_000390_230 Hb_008568_020 Hb_008568_020 Hb_000836_410--Hb_008568_020 Hb_000836_410--Hb_000230_090 Hb_000457_230 Hb_000457_230 Hb_000836_410--Hb_000457_230 Hb_000243_210 Hb_000243_210 Hb_000836_410--Hb_000243_210 Hb_007044_110 Hb_007044_110 Hb_001636_050--Hb_007044_110 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_004976_010 Hb_004976_010 Hb_001636_050--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_001636_050--Hb_000236_470 Hb_055235_020 Hb_055235_020 Hb_001636_050--Hb_055235_020 Hb_022256_060 Hb_022256_060 Hb_000679_340--Hb_022256_060 Hb_000679_340--Hb_000230_090 Hb_005965_030 Hb_005965_030 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_008887_020 Hb_008887_020 Hb_000679_340--Hb_008887_020 Hb_000922_020 Hb_000922_020 Hb_000679_340--Hb_000922_020 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000914_120 Hb_000914_120 Hb_000230_090--Hb_000914_120 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_008695_110 Hb_008695_110 Hb_000230_090--Hb_008695_110 Hb_012565_050--Hb_004976_010 Hb_000340_030 Hb_000340_030 Hb_012565_050--Hb_000340_030 Hb_000809_160 Hb_000809_160 Hb_012565_050--Hb_000809_160 Hb_002542_130 Hb_002542_130 Hb_012565_050--Hb_002542_130 Hb_004032_230 Hb_004032_230 Hb_012565_050--Hb_004032_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40066 12.3414 12.5671 5.64798 12.1785 10.7771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.7058 7.24673 4.09746 9.0195 8.03298

CAGE analysis