Hb_000457_230

Information

Type -
Description -
Location Contig457: 251287-259070
Sequence    

Annotation

kegg
ID csv:101218155
description histone-lysine N-methyltransferase setd3-like
nr
ID XP_012070924.1
description PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
swissprot
ID Q86TU7
description Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1
trembl
ID A0A067LP96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10164 PE=4 SV=1
Gene Ontology
ID GO:0009570
description histone-lysine n-methyltransferase setd3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43478: 251307-258970 , PASA_asmbl_43479: 251721-252082 , PASA_asmbl_43480: 254173-254311 , PASA_asmbl_43481: 254787-255191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_230 0.0 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
2 Hb_007044_110 0.0489446377 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000205_260 0.0493645411 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
4 Hb_003186_020 0.0517199038 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
5 Hb_011972_020 0.0520199651 - - protein binding protein, putative [Ricinus communis]
6 Hb_005523_020 0.0539343302 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
7 Hb_032202_080 0.0554879255 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
8 Hb_098209_010 0.0613962935 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
9 Hb_000836_410 0.0614129881 - - sec10, putative [Ricinus communis]
10 Hb_008059_010 0.061569753 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
11 Hb_007283_010 0.0618007076 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
12 Hb_055235_020 0.0634114367 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
13 Hb_031284_010 0.0638528214 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
14 Hb_002615_120 0.0640190869 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
15 Hb_005288_070 0.0641976875 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_000115_280 0.0643121593 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
17 Hb_001377_110 0.0647625157 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
18 Hb_008387_010 0.0659501797 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
19 Hb_008568_020 0.0674750474 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
20 Hb_138435_010 0.067517258 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000457_230 Hb_000457_230 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_007044_110--Hb_000205_260 Hb_055235_020 Hb_055235_020 Hb_007044_110--Hb_055235_020 Hb_007044_110--Hb_005523_020 Hb_001636_050 Hb_001636_050 Hb_007044_110--Hb_001636_050 Hb_004976_010 Hb_004976_010 Hb_007044_110--Hb_004976_010 Hb_000205_260--Hb_005523_020 Hb_005288_070 Hb_005288_070 Hb_000205_260--Hb_005288_070 Hb_007305_020 Hb_007305_020 Hb_000205_260--Hb_007305_020 Hb_008059_010 Hb_008059_010 Hb_000205_260--Hb_008059_010 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_031284_010 Hb_031284_010 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280 Hb_011972_020--Hb_055235_020 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_002014_040 Hb_002014_040 Hb_011972_020--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_011972_020--Hb_000238_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_005523_020--Hb_001636_050 Hb_001231_090 Hb_001231_090 Hb_005523_020--Hb_001231_090 Hb_005523_020--Hb_007305_020 Hb_002615_120 Hb_002615_120 Hb_032202_080--Hb_002615_120 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_008568_020 Hb_008568_020 Hb_032202_080--Hb_008568_020 Hb_001405_190 Hb_001405_190 Hb_032202_080--Hb_001405_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.807 19.1031 24.1237 12.7441 15.0362 15.4088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.68787 8.9517 7.89516 12.362 18.9406

CAGE analysis