Hb_098209_010

Information

Type -
Description -
Location Contig98209: 2019-8111
Sequence    

Annotation

kegg
ID rcu:RCOM_1599410
description ATP synthase subunit beta vacuolar, putative (EC:3.6.3.15)
nr
ID XP_002510596.1
description ATP synthase subunit beta vacuolar, putative [Ricinus communis]
swissprot
ID Q43432
description V-type proton ATPase subunit B 1 OS=Gossypium hirsutum PE=2 SV=1
trembl
ID B9R8F3
description ATP synthase subunit beta vacuolar, putative OS=Ricinus communis GN=RCOM_1599410 PE=3 SV=1
Gene Ontology
ID GO:0033180
description v-type proton atpase subunit b2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64433: 2068-8105 , PASA_asmbl_64434: 2059-8167 , PASA_asmbl_64435: 2059-8109 , PASA_asmbl_64436: 6097-6513 , PASA_asmbl_64437: 4514-5087 , PASA_asmbl_64438: 4335-8127 , PASA_asmbl_64439: 4384-5099
cDNA
(Sanger)
(ID:Location)		 010_O14.ab1: 5280-8078 , 029_J18.ab1: 4969-8102 , 046_B02.ab1: 4335-8102

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098209_010 0.0 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
2 Hb_000457_230 0.0613962935 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
3 Hb_011972_020 0.0614072484 - - protein binding protein, putative [Ricinus communis]
4 Hb_001377_110 0.0629997191 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
5 Hb_001723_140 0.0691000121 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
6 Hb_005895_010 0.0703531727 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
7 Hb_002014_040 0.0732533898 - - site-1 protease, putative [Ricinus communis]
8 Hb_009771_110 0.0752046891 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
9 Hb_000205_260 0.0757689547 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
10 Hb_007305_020 0.0761282687 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
11 Hb_000362_170 0.076364315 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
12 Hb_001405_190 0.0764648839 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
13 Hb_013358_070 0.0783380775 - - protein with unknown function [Ricinus communis]
14 Hb_001318_070 0.0786212886 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
15 Hb_003186_020 0.0794494331 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
16 Hb_006573_160 0.080260774 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
17 Hb_000820_150 0.080334757 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
18 Hb_008387_010 0.0805257173 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
19 Hb_000879_040 0.080623641 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
20 Hb_001231_090 0.0812537556 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_098209_010 Hb_098209_010 Hb_000457_230 Hb_000457_230 Hb_098209_010--Hb_000457_230 Hb_011972_020 Hb_011972_020 Hb_098209_010--Hb_011972_020 Hb_001377_110 Hb_001377_110 Hb_098209_010--Hb_001377_110 Hb_001723_140 Hb_001723_140 Hb_098209_010--Hb_001723_140 Hb_005895_010 Hb_005895_010 Hb_098209_010--Hb_005895_010 Hb_002014_040 Hb_002014_040 Hb_098209_010--Hb_002014_040 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_055235_020 Hb_055235_020 Hb_011972_020--Hb_055235_020 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_011972_020--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_011972_020--Hb_000238_040 Hb_009771_110 Hb_009771_110 Hb_001377_110--Hb_009771_110 Hb_001377_110--Hb_000457_230 Hb_007929_080 Hb_007929_080 Hb_001377_110--Hb_007929_080 Hb_001377_110--Hb_003186_020 Hb_001021_220 Hb_001021_220 Hb_001377_110--Hb_001021_220 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_001723_140--Hb_000529_060 Hb_000362_170 Hb_000362_170 Hb_005895_010--Hb_000362_170 Hb_002539_110 Hb_002539_110 Hb_005895_010--Hb_002539_110 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_005895_010--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_005895_010--Hb_001002_060 Hb_000640_070 Hb_000640_070 Hb_005895_010--Hb_000640_070 Hb_002014_040--Hb_000362_170 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_002014_040--Hb_008226_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.326 136.813 152.677 104.507 109.228 121.857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.9887 34.6366 49.1662 83.0833 130.82

CAGE analysis