Hb_000205_260

Information

Type transcription factor
Description TF Family: SNF2
Location Contig205: 305759-322197
Sequence    

Annotation

kegg
ID rcu:RCOM_0610050
description hypothetical protein
nr
ID KDP23734.1
description hypothetical protein JCGZ_23567 [Jatropha curcas]
swissprot
ID F4HW51
description Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana GN=ATRX PE=2 SV=2
trembl
ID A0A067JW49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23567 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein chromatin remodeling 20 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21136: 305944-313492 , PASA_asmbl_21137: 313525-318404 , PASA_asmbl_21138: 319254-320169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_260 0.0 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
2 Hb_005523_020 0.0327607593 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
3 Hb_007044_110 0.0328647404 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000457_230 0.0493645411 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
5 Hb_005288_070 0.0632257068 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_007305_020 0.065512025 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
7 Hb_008059_010 0.0659984756 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
8 Hb_055235_020 0.068885491 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
9 Hb_007283_010 0.070994072 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
10 Hb_000879_040 0.0712440309 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
11 Hb_001636_050 0.071669126 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
12 Hb_011972_020 0.0719146333 - - protein binding protein, putative [Ricinus communis]
13 Hb_004976_010 0.0731920309 - - hypothetical protein RCOM_1429110 [Ricinus communis]
14 Hb_001231_090 0.0737667291 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
15 Hb_001252_230 0.0750829145 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
16 Hb_001318_070 0.0751519974 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
17 Hb_000579_010 0.0752475883 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
18 Hb_000243_210 0.0755156291 - - protein with unknown function [Ricinus communis]
19 Hb_098209_010 0.0757689547 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
20 Hb_000245_150 0.0762292704 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_000205_260 Hb_000205_260 Hb_005523_020 Hb_005523_020 Hb_000205_260--Hb_005523_020 Hb_007044_110 Hb_007044_110 Hb_000205_260--Hb_007044_110 Hb_000457_230 Hb_000457_230 Hb_000205_260--Hb_000457_230 Hb_005288_070 Hb_005288_070 Hb_000205_260--Hb_005288_070 Hb_007305_020 Hb_007305_020 Hb_000205_260--Hb_007305_020 Hb_008059_010 Hb_008059_010 Hb_000205_260--Hb_008059_010 Hb_005523_020--Hb_007044_110 Hb_005523_020--Hb_000457_230 Hb_001636_050 Hb_001636_050 Hb_005523_020--Hb_001636_050 Hb_001231_090 Hb_001231_090 Hb_005523_020--Hb_001231_090 Hb_005523_020--Hb_007305_020 Hb_007044_110--Hb_000457_230 Hb_055235_020 Hb_055235_020 Hb_007044_110--Hb_055235_020 Hb_007044_110--Hb_001636_050 Hb_004976_010 Hb_004976_010 Hb_007044_110--Hb_004976_010 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_007283_010 Hb_007283_010 Hb_005288_070--Hb_007283_010 Hb_030414_040 Hb_030414_040 Hb_005288_070--Hb_030414_040 Hb_005288_070--Hb_007044_110 Hb_005288_070--Hb_000457_230 Hb_000111_170 Hb_000111_170 Hb_005288_070--Hb_000111_170 Hb_000086_150 Hb_000086_150 Hb_007305_020--Hb_000086_150 Hb_002571_030 Hb_002571_030 Hb_007305_020--Hb_002571_030 Hb_007305_020--Hb_055235_020 Hb_007305_020--Hb_007044_110 Hb_031284_010 Hb_031284_010 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_000115_280 Hb_000115_280 Hb_008059_010--Hb_000115_280 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.06213 12.6094 12.0886 5.80705 9.00974 8.53757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.02087 4.75382 4.37514 7.05002 12.5765

CAGE analysis