Hb_002571_030

Information

Type -
Description -
Location Contig2571: 28968-31806
Sequence    

Annotation

kegg
ID pmum:103326572
description microfibrillar-associated protein 1-like
nr
ID XP_008227035.1
description PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
swissprot
ID Q5EA98
description Microfibrillar-associated protein 1 OS=Bos taurus GN=MFAP1 PE=2 SV=1
trembl
ID M5WI16
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005985mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26754: 28971-31909 , PASA_asmbl_26755: 28971-31877
cDNA
(Sanger)
(ID:Location)		 015_A13.ab1: 30910-31909 , 017_C12.ab1: 31053-31909

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002571_030 0.0 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
2 Hb_007818_040 0.0503739434 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
3 Hb_007929_080 0.0523524771 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
4 Hb_009771_110 0.0609865984 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
5 Hb_007305_020 0.0658225971 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
6 Hb_000523_080 0.0705882766 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
7 Hb_001021_200 0.0733033774 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
8 Hb_000577_030 0.0743504919 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
9 Hb_001047_200 0.0746424864 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
10 Hb_007283_030 0.0748215707 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
11 Hb_009449_090 0.075164508 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
12 Hb_000236_470 0.0779241343 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
13 Hb_006618_090 0.0780556387 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
14 Hb_001231_090 0.0787790701 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
15 Hb_003739_030 0.0813875647 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
16 Hb_000023_320 0.0815080303 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001959_270 0.081555942 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000917_160 0.0821579132 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
19 Hb_003943_020 0.0827318737 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
20 Hb_000230_090 0.0834933662 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002571_030 Hb_002571_030 Hb_007818_040 Hb_007818_040 Hb_002571_030--Hb_007818_040 Hb_007929_080 Hb_007929_080 Hb_002571_030--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_002571_030--Hb_009771_110 Hb_007305_020 Hb_007305_020 Hb_002571_030--Hb_007305_020 Hb_000523_080 Hb_000523_080 Hb_002571_030--Hb_000523_080 Hb_001021_200 Hb_001021_200 Hb_002571_030--Hb_001021_200 Hb_007283_030 Hb_007283_030 Hb_007818_040--Hb_007283_030 Hb_007576_230 Hb_007576_230 Hb_007818_040--Hb_007576_230 Hb_001959_270 Hb_001959_270 Hb_007818_040--Hb_001959_270 Hb_179154_020 Hb_179154_020 Hb_007818_040--Hb_179154_020 Hb_000377_050 Hb_000377_050 Hb_007818_040--Hb_000377_050 Hb_007929_080--Hb_009771_110 Hb_007929_080--Hb_000523_080 Hb_001405_190 Hb_001405_190 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090 Hb_009771_110--Hb_006618_090 Hb_005053_010 Hb_005053_010 Hb_009771_110--Hb_005053_010 Hb_160459_040 Hb_160459_040 Hb_009771_110--Hb_160459_040 Hb_009771_110--Hb_000523_080 Hb_000086_150 Hb_000086_150 Hb_007305_020--Hb_000086_150 Hb_000205_260 Hb_000205_260 Hb_007305_020--Hb_000205_260 Hb_055235_020 Hb_055235_020 Hb_007305_020--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_007305_020--Hb_007044_110 Hb_005523_020 Hb_005523_020 Hb_007305_020--Hb_005523_020 Hb_128548_010 Hb_128548_010 Hb_000523_080--Hb_128548_010 Hb_003943_020 Hb_003943_020 Hb_000523_080--Hb_003943_020 Hb_001723_140 Hb_001723_140 Hb_000523_080--Hb_001723_140 Hb_013358_070 Hb_013358_070 Hb_000523_080--Hb_013358_070 Hb_000577_030 Hb_000577_030 Hb_001021_200--Hb_000577_030 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_002022_070 Hb_002022_070 Hb_001021_200--Hb_002022_070 Hb_005104_010 Hb_005104_010 Hb_001021_200--Hb_005104_010 Hb_000917_160 Hb_000917_160 Hb_001021_200--Hb_000917_160 Hb_000236_470 Hb_000236_470 Hb_001021_200--Hb_000236_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.7274 65.785 58.4799 25.1015 58.0798 52.0636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9144 15.7239 18.446 40.6549 47.9972

CAGE analysis