Hb_001021_200

Information

Type desease resistance
Description Gene Name: AAA
Location Contig1021: 228305-235759
Sequence    

Annotation

kegg
ID rcu:RCOM_0555340
description peroxisome assembly factor-2, putative (EC:3.6.4.3)
nr
ID XP_012082698.1
description PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
swissprot
ID Q8RY16
description Peroxisome biogenesis protein 6 OS=Arabidopsis thaliana GN=PEX6 PE=1 SV=1
trembl
ID A0A067K770
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13876 PE=3 SV=1
Gene Ontology
ID GO:0005622
description peroxisome biogenesis protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00994: 228355-230173 , PASA_asmbl_00995: 230362-231733 , PASA_asmbl_00996: 232461-234408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_200 0.0 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
2 Hb_000577_030 0.0511501491 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
3 Hb_000230_090 0.0637460722 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
4 Hb_002022_070 0.0658993336 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
5 Hb_005104_010 0.0676774671 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
6 Hb_000917_160 0.0681689361 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
7 Hb_000236_470 0.0685976953 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
8 Hb_000661_200 0.0698285762 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
9 Hb_000960_050 0.070124231 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
10 Hb_000025_320 0.0717255584 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
11 Hb_000028_510 0.0721637769 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
12 Hb_000174_060 0.072656032 - - zinc finger family protein [Populus trichocarpa]
13 Hb_004032_230 0.0728826117 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
14 Hb_032920_130 0.0731519235 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
15 Hb_002571_030 0.0733033774 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
16 Hb_001047_200 0.0737357682 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
17 Hb_007929_080 0.0750702006 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
18 Hb_001231_090 0.0754685696 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
19 Hb_001191_120 0.0770608641 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
20 Hb_000191_130 0.0779638503 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001021_200 Hb_001021_200 Hb_000577_030 Hb_000577_030 Hb_001021_200--Hb_000577_030 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_002022_070 Hb_002022_070 Hb_001021_200--Hb_002022_070 Hb_005104_010 Hb_005104_010 Hb_001021_200--Hb_005104_010 Hb_000917_160 Hb_000917_160 Hb_001021_200--Hb_000917_160 Hb_000236_470 Hb_000236_470 Hb_001021_200--Hb_000236_470 Hb_001047_200 Hb_001047_200 Hb_000577_030--Hb_001047_200 Hb_000184_150 Hb_000184_150 Hb_000577_030--Hb_000184_150 Hb_000577_030--Hb_000917_160 Hb_032920_130 Hb_032920_130 Hb_000577_030--Hb_032920_130 Hb_118840_050 Hb_118840_050 Hb_000577_030--Hb_118840_050 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000914_120 Hb_000914_120 Hb_000230_090--Hb_000914_120 Hb_000679_340 Hb_000679_340 Hb_000230_090--Hb_000679_340 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_008695_110 Hb_008695_110 Hb_000230_090--Hb_008695_110 Hb_000960_100 Hb_000960_100 Hb_002022_070--Hb_000960_100 Hb_000025_320 Hb_000025_320 Hb_002022_070--Hb_000025_320 Hb_004884_010 Hb_004884_010 Hb_002022_070--Hb_004884_010 Hb_004108_100 Hb_004108_100 Hb_002022_070--Hb_004108_100 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510 Hb_004629_010 Hb_004629_010 Hb_005104_010--Hb_004629_010 Hb_000120_660 Hb_000120_660 Hb_005104_010--Hb_000120_660 Hb_000786_040 Hb_000786_040 Hb_005104_010--Hb_000786_040 Hb_000345_150 Hb_000345_150 Hb_005104_010--Hb_000345_150 Hb_003106_030 Hb_003106_030 Hb_005104_010--Hb_003106_030 Hb_000062_470 Hb_000062_470 Hb_000917_160--Hb_000062_470 Hb_000191_130 Hb_000191_130 Hb_000917_160--Hb_000191_130 Hb_000917_160--Hb_118840_050 Hb_000406_230 Hb_000406_230 Hb_000917_160--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_000917_160--Hb_007558_070 Hb_010417_060 Hb_010417_060 Hb_000917_160--Hb_010417_060 Hb_001277_020 Hb_001277_020 Hb_000236_470--Hb_001277_020 Hb_000640_310 Hb_000640_310 Hb_000236_470--Hb_000640_310 Hb_002701_150 Hb_002701_150 Hb_000236_470--Hb_002701_150 Hb_000236_470--Hb_001047_200 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_000556_170 Hb_000556_170 Hb_000236_470--Hb_000556_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.17206 16.8135 10.9768 6.24938 14.3298 11.7578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.64591 4.31899 6.4488 8.50373 8.65429

CAGE analysis