Hb_000120_660

Information

Type -
Description -
Location Contig120: 521048-530321
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10520g
description POPTRDRAFT_558791; hypothetical protein
nr
ID XP_012065408.1
description PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
swissprot
ID Q9HGL2
description Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=3 SV=1
trembl
ID A0A067LGU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22402 PE=4 SV=1
Gene Ontology
ID GO:0005509
description epidermal growth factor receptor substrate 15-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06180: 521059-530238 , PASA_asmbl_06181: 527831-530238 , PASA_asmbl_06183: 524756-524942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_660 0.0 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
2 Hb_003729_030 0.064709185 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
3 Hb_004629_010 0.0663593004 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
4 Hb_157966_010 0.0704181666 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
5 Hb_005104_010 0.0710042197 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
6 Hb_000780_170 0.0719290301 - - PREDICTED: OBERON-like protein [Jatropha curcas]
7 Hb_008253_030 0.0744599918 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
8 Hb_006185_060 0.0760644874 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
9 Hb_000345_150 0.0803282251 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
10 Hb_002615_090 0.0807558709 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_000028_510 0.082560708 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
12 Hb_000327_280 0.0827690915 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
13 Hb_000260_640 0.0827719482 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
14 Hb_002253_080 0.0832112763 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
15 Hb_000977_120 0.0837049728 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
16 Hb_000960_100 0.0839745173 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
17 Hb_002022_070 0.0842787433 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
18 Hb_000941_130 0.0844250884 - - gamma-tubulin complex component, putative [Ricinus communis]
19 Hb_009615_170 0.0846437826 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
20 Hb_001021_200 0.085661239 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_660 Hb_000120_660 Hb_003729_030 Hb_003729_030 Hb_000120_660--Hb_003729_030 Hb_004629_010 Hb_004629_010 Hb_000120_660--Hb_004629_010 Hb_157966_010 Hb_157966_010 Hb_000120_660--Hb_157966_010 Hb_005104_010 Hb_005104_010 Hb_000120_660--Hb_005104_010 Hb_000780_170 Hb_000780_170 Hb_000120_660--Hb_000780_170 Hb_008253_030 Hb_008253_030 Hb_000120_660--Hb_008253_030 Hb_000321_150 Hb_000321_150 Hb_003729_030--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_003729_030--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_003729_030--Hb_002253_080 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_004629_010--Hb_005104_010 Hb_003929_140 Hb_003929_140 Hb_004629_010--Hb_003929_140 Hb_004659_080 Hb_004659_080 Hb_157966_010--Hb_004659_080 Hb_000622_250 Hb_000622_250 Hb_157966_010--Hb_000622_250 Hb_018133_050 Hb_018133_050 Hb_157966_010--Hb_018133_050 Hb_006663_040 Hb_006663_040 Hb_157966_010--Hb_006663_040 Hb_007676_100 Hb_007676_100 Hb_157966_010--Hb_007676_100 Hb_001021_200 Hb_001021_200 Hb_005104_010--Hb_001021_200 Hb_000786_040 Hb_000786_040 Hb_005104_010--Hb_000786_040 Hb_000345_150 Hb_000345_150 Hb_005104_010--Hb_000345_150 Hb_003106_030 Hb_003106_030 Hb_005104_010--Hb_003106_030 Hb_000780_170--Hb_008253_030 Hb_001033_050 Hb_001033_050 Hb_000780_170--Hb_001033_050 Hb_001147_110 Hb_001147_110 Hb_000780_170--Hb_001147_110 Hb_000418_140 Hb_000418_140 Hb_000780_170--Hb_000418_140 Hb_000046_070 Hb_000046_070 Hb_000780_170--Hb_000046_070 Hb_001767_140 Hb_001767_140 Hb_008253_030--Hb_001767_140 Hb_008253_030--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_008253_030--Hb_002267_140 Hb_008253_030--Hb_001147_110 Hb_000479_220 Hb_000479_220 Hb_008253_030--Hb_000479_220 Hb_002276_240 Hb_002276_240 Hb_008253_030--Hb_002276_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3454 56.1551 23.6237 23.8997 31.3666 38.1052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7474 9.03674 25.0184 23.1068 22.6157

CAGE analysis