Hb_006787_060

Information

Type -
Description -
Location Contig6787: 53723-63373
Sequence    

Annotation

kegg
ID tcc:TCM_007095
description RING/U-box domain-containing protein isoform 1
nr
ID XP_012087495.1
description PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
swissprot
ID F4JKK0
description Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1
trembl
ID A0A067JLY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23989 PE=4 SV=1
Gene Ontology
ID GO:0004842
description probable e3 ubiquitin ligase sud1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53632: 53779-63357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006787_060 0.0 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
2 Hb_001231_030 0.0586129707 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
3 Hb_004629_010 0.0661151944 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
4 Hb_032920_130 0.068357284 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
5 Hb_133047_010 0.0798494615 - - xanthine dehydrogenase, putative [Ricinus communis]
6 Hb_000935_090 0.0817372021 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
7 Hb_002022_070 0.0824815222 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
8 Hb_003929_140 0.0836781789 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000176_130 0.0847951344 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
10 Hb_000345_150 0.0848671519 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
11 Hb_005214_150 0.0854124835 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
12 Hb_002392_030 0.0857855047 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
13 Hb_000786_040 0.0882480767 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
14 Hb_004884_010 0.0883105905 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
15 Hb_000577_030 0.0885869996 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
16 Hb_005104_010 0.0894188556 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
17 Hb_002571_030 0.0894617427 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
18 Hb_000062_470 0.0915253038 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
19 Hb_010417_060 0.0922334013 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
20 Hb_001493_040 0.0927085496 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]

Gene co-expression network

sample Hb_006787_060 Hb_006787_060 Hb_001231_030 Hb_001231_030 Hb_006787_060--Hb_001231_030 Hb_004629_010 Hb_004629_010 Hb_006787_060--Hb_004629_010 Hb_032920_130 Hb_032920_130 Hb_006787_060--Hb_032920_130 Hb_133047_010 Hb_133047_010 Hb_006787_060--Hb_133047_010 Hb_000935_090 Hb_000935_090 Hb_006787_060--Hb_000935_090 Hb_002022_070 Hb_002022_070 Hb_006787_060--Hb_002022_070 Hb_002902_020 Hb_002902_020 Hb_001231_030--Hb_002902_020 Hb_001231_030--Hb_004629_010 Hb_002997_160 Hb_002997_160 Hb_001231_030--Hb_002997_160 Hb_005104_010 Hb_005104_010 Hb_001231_030--Hb_005104_010 Hb_000753_100 Hb_000753_100 Hb_001231_030--Hb_000753_100 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_004629_010--Hb_005104_010 Hb_003929_140 Hb_003929_140 Hb_004629_010--Hb_003929_140 Hb_010417_060 Hb_010417_060 Hb_032920_130--Hb_010417_060 Hb_000261_030 Hb_000261_030 Hb_032920_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_032920_130--Hb_002044_170 Hb_000035_410 Hb_000035_410 Hb_032920_130--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_032920_130--Hb_001235_230 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_133047_010--Hb_002392_030 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_133047_010--Hb_148909_030 Hb_001178_150 Hb_001178_150 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000796_190 Hb_000796_190 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_000960_100 Hb_000960_100 Hb_002022_070--Hb_000960_100 Hb_000025_320 Hb_000025_320 Hb_002022_070--Hb_000025_320 Hb_002022_070--Hb_004884_010 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_004108_100 Hb_004108_100 Hb_002022_070--Hb_004108_100 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.0788 65.6235 36.2299 28.0988 58.2895 59.708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.542 7.71308 21.3599 30.4315 43.6271

CAGE analysis