Hb_002902_020

Information

Type -
Description -
Location Contig2902: 12153-13202
Sequence    

Annotation

kegg
ID rcu:RCOM_0578400
description hypothetical protein
nr
ID XP_012079378.1
description PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SGY4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0578400 PE=4 SV=1
Gene Ontology
ID GO:0070461
description PREDICTED: uncharacterized protein LOC105639827

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002902_020 0.0 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
2 Hb_000230_430 0.0639657793 - - catalytic, putative [Ricinus communis]
3 Hb_001231_030 0.0651135796 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
4 Hb_096819_010 0.08163573 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
5 Hb_000345_490 0.0821647812 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
6 Hb_002282_060 0.0837761351 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
7 Hb_000264_070 0.0872369687 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
8 Hb_001454_220 0.0908346897 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
9 Hb_003470_030 0.0916015971 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
10 Hb_001231_090 0.0917691948 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
11 Hb_118840_050 0.0923331123 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
12 Hb_002073_280 0.0938514856 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
13 Hb_001243_060 0.0939468453 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
14 Hb_005104_010 0.0943579891 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
15 Hb_000958_150 0.0948652764 - - Actin, putative [Ricinus communis]
16 Hb_000024_120 0.0951449736 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
17 Hb_004629_010 0.0964975865 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
18 Hb_011920_020 0.0972432463 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
19 Hb_005054_190 0.0981745238 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
20 Hb_000363_280 0.0983859975 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]

Gene co-expression network

sample Hb_002902_020 Hb_002902_020 Hb_000230_430 Hb_000230_430 Hb_002902_020--Hb_000230_430 Hb_001231_030 Hb_001231_030 Hb_002902_020--Hb_001231_030 Hb_096819_010 Hb_096819_010 Hb_002902_020--Hb_096819_010 Hb_000345_490 Hb_000345_490 Hb_002902_020--Hb_000345_490 Hb_002282_060 Hb_002282_060 Hb_002902_020--Hb_002282_060 Hb_000264_070 Hb_000264_070 Hb_002902_020--Hb_000264_070 Hb_001243_060 Hb_001243_060 Hb_000230_430--Hb_001243_060 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000230_430--Hb_000264_070 Hb_009780_100 Hb_009780_100 Hb_000230_430--Hb_009780_100 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_006787_060 Hb_006787_060 Hb_001231_030--Hb_006787_060 Hb_004629_010 Hb_004629_010 Hb_001231_030--Hb_004629_010 Hb_002997_160 Hb_002997_160 Hb_001231_030--Hb_002997_160 Hb_005104_010 Hb_005104_010 Hb_001231_030--Hb_005104_010 Hb_000753_100 Hb_000753_100 Hb_001231_030--Hb_000753_100 Hb_030545_030 Hb_030545_030 Hb_096819_010--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_096819_010--Hb_002903_140 Hb_008165_030 Hb_008165_030 Hb_096819_010--Hb_008165_030 Hb_000958_150 Hb_000958_150 Hb_096819_010--Hb_000958_150 Hb_011920_020 Hb_011920_020 Hb_096819_010--Hb_011920_020 Hb_000024_120 Hb_000024_120 Hb_000345_490--Hb_000024_120 Hb_005610_080 Hb_005610_080 Hb_000345_490--Hb_005610_080 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_005054_190 Hb_005054_190 Hb_000345_490--Hb_005054_190 Hb_155159_010 Hb_155159_010 Hb_002282_060--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_002282_060--Hb_001231_090 Hb_002073_280 Hb_002073_280 Hb_002282_060--Hb_002073_280 Hb_010661_020 Hb_010661_020 Hb_002282_060--Hb_010661_020 Hb_002542_130 Hb_002542_130 Hb_002282_060--Hb_002542_130 Hb_000703_130 Hb_000703_130 Hb_002282_060--Hb_000703_130 Hb_004032_230 Hb_004032_230 Hb_000264_070--Hb_004032_230 Hb_002477_250 Hb_002477_250 Hb_000264_070--Hb_002477_250 Hb_000023_320 Hb_000023_320 Hb_000264_070--Hb_000023_320 Hb_001405_190 Hb_001405_190 Hb_000264_070--Hb_001405_190 Hb_000264_070--Hb_001231_090 Hb_102438_030 Hb_102438_030 Hb_000264_070--Hb_102438_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42278 5.77822 3.89685 2.55351 3.88584 4.31994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33575 0.975567 1.03918 1.61271 2.46466

CAGE analysis