Hb_000625_120

Information

Type -
Description -
Location Contig625: 106325-116379
Sequence    

Annotation

kegg
ID rcu:RCOM_0870530
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012065919.1
description PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
swissprot
ID Q9FKW4
description Calcium-dependent protein kinase 28 OS=Arabidopsis thaliana GN=CPK28 PE=1 SV=1
trembl
ID A0A067LHE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06541 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51640: 106738-108670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000625_120 0.0 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
2 Hb_000230_430 0.0781753997 - - catalytic, putative [Ricinus communis]
3 Hb_012114_050 0.082226168 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
4 Hb_007193_110 0.0845446932 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
5 Hb_118840_050 0.0852334462 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
6 Hb_007017_070 0.0883196065 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
7 Hb_000345_490 0.0911447097 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
8 Hb_000264_080 0.0917694632 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
9 Hb_000926_010 0.0922903085 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
10 Hb_005610_080 0.0923797995 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000264_070 0.0930811401 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
12 Hb_000227_310 0.093761714 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
13 Hb_031711_010 0.0960535281 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
14 Hb_000577_030 0.0962349577 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
15 Hb_143766_110 0.0969999975 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
16 Hb_000723_110 0.0974011105 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
17 Hb_004032_230 0.0997314187 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
18 Hb_002379_050 0.0998855624 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
19 Hb_002073_280 0.1002083678 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
20 Hb_001021_200 0.1002461596 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000625_120 Hb_000625_120 Hb_000230_430 Hb_000230_430 Hb_000625_120--Hb_000230_430 Hb_012114_050 Hb_012114_050 Hb_000625_120--Hb_012114_050 Hb_007193_110 Hb_007193_110 Hb_000625_120--Hb_007193_110 Hb_118840_050 Hb_118840_050 Hb_000625_120--Hb_118840_050 Hb_007017_070 Hb_007017_070 Hb_000625_120--Hb_007017_070 Hb_000345_490 Hb_000345_490 Hb_000625_120--Hb_000345_490 Hb_001243_060 Hb_001243_060 Hb_000230_430--Hb_001243_060 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_009780_100 Hb_009780_100 Hb_000230_430--Hb_009780_100 Hb_000230_430--Hb_118840_050 Hb_012114_050--Hb_007193_110 Hb_004410_070 Hb_004410_070 Hb_012114_050--Hb_004410_070 Hb_000556_170 Hb_000556_170 Hb_012114_050--Hb_000556_170 Hb_000094_320 Hb_000094_320 Hb_012114_050--Hb_000094_320 Hb_007576_220 Hb_007576_220 Hb_012114_050--Hb_007576_220 Hb_007193_110--Hb_004410_070 Hb_007193_110--Hb_007576_220 Hb_007193_110--Hb_000094_320 Hb_007193_110--Hb_000556_170 Hb_001021_200 Hb_001021_200 Hb_007193_110--Hb_001021_200 Hb_000917_160 Hb_000917_160 Hb_118840_050--Hb_000917_160 Hb_000191_130 Hb_000191_130 Hb_118840_050--Hb_000191_130 Hb_000062_470 Hb_000062_470 Hb_118840_050--Hb_000062_470 Hb_000577_030 Hb_000577_030 Hb_118840_050--Hb_000577_030 Hb_001047_200 Hb_001047_200 Hb_118840_050--Hb_001047_200 Hb_007017_070--Hb_004410_070 Hb_000227_310 Hb_000227_310 Hb_007017_070--Hb_000227_310 Hb_000723_110 Hb_000723_110 Hb_007017_070--Hb_000723_110 Hb_030545_030 Hb_030545_030 Hb_007017_070--Hb_030545_030 Hb_102438_030 Hb_102438_030 Hb_007017_070--Hb_102438_030 Hb_002903_140 Hb_002903_140 Hb_007017_070--Hb_002903_140 Hb_000024_120 Hb_000024_120 Hb_000345_490--Hb_000024_120 Hb_005610_080 Hb_005610_080 Hb_000345_490--Hb_005610_080 Hb_000345_490--Hb_002902_020 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_005054_190 Hb_005054_190 Hb_000345_490--Hb_005054_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1001 62.2852 48.9591 21.9758 42.7786 36.2969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0025 9.60652 19.0248 22.3114 14.0656

CAGE analysis