Hb_005610_080

Information

Type -
Description -
Location Contig5610: 65293-70531
Sequence    

Annotation

kegg
ID rcu:RCOM_0813850
description hypothetical protein
nr
ID XP_002518784.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYK0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48790: 65131-70604 , PASA_asmbl_48791: 66253-66631
cDNA
(Sanger)
(ID:Location)		 019_F05.ab1: 69846-70471 , 030_C19.ab1: 69950-70471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005610_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006132_040 0.0697979895 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
3 Hb_000024_120 0.0736610958 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
4 Hb_003430_030 0.0775011544 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
5 Hb_000345_490 0.0811120175 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
6 Hb_005054_190 0.0845545495 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
7 Hb_000890_010 0.0892451662 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000625_120 0.0923797995 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
9 Hb_003228_030 0.0953683384 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
10 Hb_000227_310 0.0954471007 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
11 Hb_000077_120 0.0983522156 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
12 Hb_007576_220 0.1049831809 - - PREDICTED: kanadaptin [Jatropha curcas]
13 Hb_021530_010 0.1052348488 - - PREDICTED: la protein 1 [Jatropha curcas]
14 Hb_005054_310 0.107813596 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
15 Hb_008165_030 0.1091099818 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
16 Hb_002291_060 0.1099034842 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
17 Hb_002890_150 0.1115438604 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
18 Hb_000926_010 0.1120490536 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
19 Hb_013405_150 0.1125395737 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
20 Hb_000363_280 0.1129169651 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]

Gene co-expression network

sample Hb_005610_080 Hb_005610_080 Hb_006132_040 Hb_006132_040 Hb_005610_080--Hb_006132_040 Hb_000024_120 Hb_000024_120 Hb_005610_080--Hb_000024_120 Hb_003430_030 Hb_003430_030 Hb_005610_080--Hb_003430_030 Hb_000345_490 Hb_000345_490 Hb_005610_080--Hb_000345_490 Hb_005054_190 Hb_005054_190 Hb_005610_080--Hb_005054_190 Hb_000890_010 Hb_000890_010 Hb_005610_080--Hb_000890_010 Hb_006132_040--Hb_000890_010 Hb_004236_030 Hb_004236_030 Hb_006132_040--Hb_004236_030 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_000227_310 Hb_000227_310 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_000024_120--Hb_000345_490 Hb_009449_090 Hb_009449_090 Hb_000024_120--Hb_009449_090 Hb_000024_120--Hb_005054_190 Hb_000024_120--Hb_003430_030 Hb_000116_510 Hb_000116_510 Hb_000024_120--Hb_000116_510 Hb_003430_030--Hb_005054_190 Hb_000363_280 Hb_000363_280 Hb_003430_030--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_003430_030--Hb_000120_420 Hb_003430_030--Hb_000345_490 Hb_002902_020 Hb_002902_020 Hb_000345_490--Hb_002902_020 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_000345_490--Hb_005054_190 Hb_005054_190--Hb_000363_280 Hb_011918_050 Hb_011918_050 Hb_005054_190--Hb_011918_050 Hb_013405_150 Hb_013405_150 Hb_000890_010--Hb_013405_150 Hb_000077_120 Hb_000077_120 Hb_000890_010--Hb_000077_120 Hb_000890_010--Hb_004236_030 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7768 40.0104 36.1274 8.46698 22.9938 16.8149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.1778 5.53019 6.2348 12.2267 8.98772

CAGE analysis