Hb_000077_120

Information

Type -
Description -
Location Contig77: 85930-99791
Sequence    

Annotation

kegg
ID rcu:RCOM_1174400
description Voltage-dependent L-type calcium channel, putative
nr
ID XP_012088278.1
description PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
swissprot
ID Q94KI8
description Two pore calcium channel protein 1 OS=Arabidopsis thaliana GN=TPC1 PE=1 SV=1
trembl
ID A0A067JJP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25779 PE=4 SV=1
Gene Ontology
ID GO:0000325
description two pore calcium channel protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57571: 85883-99614 , PASA_asmbl_57572: 85947-99495 , PASA_asmbl_57573: 87666-87819 , PASA_asmbl_57577: 90581-90910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_120 0.0 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
2 Hb_002291_060 0.070941469 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
3 Hb_044155_010 0.0724127875 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
4 Hb_002890_150 0.0782232444 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
5 Hb_013405_150 0.0791190652 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
6 Hb_000139_220 0.0791638541 - - leucine rich repeat-containing protein, putative [Ricinus communis]
7 Hb_000890_010 0.0898581389 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000345_490 0.0921508904 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
9 Hb_010287_030 0.0958830534 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005610_080 0.0983522156 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003849_040 0.1048926594 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
12 Hb_172257_010 0.1059860052 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
13 Hb_004725_030 0.1063532485 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
14 Hb_005656_080 0.1076168658 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
15 Hb_008165_030 0.1088752927 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
16 Hb_000098_140 0.1095865008 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
17 Hb_006132_040 0.1110680973 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
18 Hb_000985_040 0.1136456204 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
19 Hb_039605_010 0.1161578996 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
20 Hb_003605_050 0.1174021986 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000077_120 Hb_000077_120 Hb_002291_060 Hb_002291_060 Hb_000077_120--Hb_002291_060 Hb_044155_010 Hb_044155_010 Hb_000077_120--Hb_044155_010 Hb_002890_150 Hb_002890_150 Hb_000077_120--Hb_002890_150 Hb_013405_150 Hb_013405_150 Hb_000077_120--Hb_013405_150 Hb_000139_220 Hb_000139_220 Hb_000077_120--Hb_000139_220 Hb_000890_010 Hb_000890_010 Hb_000077_120--Hb_000890_010 Hb_002291_060--Hb_044155_010 Hb_002291_060--Hb_000139_220 Hb_000345_490 Hb_000345_490 Hb_002291_060--Hb_000345_490 Hb_010287_030 Hb_010287_030 Hb_002291_060--Hb_010287_030 Hb_172257_010 Hb_172257_010 Hb_002291_060--Hb_172257_010 Hb_044155_010--Hb_013405_150 Hb_006132_040 Hb_006132_040 Hb_044155_010--Hb_006132_040 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140 Hb_003849_040 Hb_003849_040 Hb_002890_150--Hb_003849_040 Hb_000985_040 Hb_000985_040 Hb_002890_150--Hb_000985_040 Hb_002890_150--Hb_044155_010 Hb_005054_190 Hb_005054_190 Hb_002890_150--Hb_005054_190 Hb_005610_080 Hb_005610_080 Hb_002890_150--Hb_005610_080 Hb_013405_150--Hb_000890_010 Hb_013405_150--Hb_006132_040 Hb_013405_150--Hb_000139_220 Hb_000343_150 Hb_000343_150 Hb_013405_150--Hb_000343_150 Hb_000940_050 Hb_000940_050 Hb_000139_220--Hb_000940_050 Hb_009449_060 Hb_009449_060 Hb_000139_220--Hb_009449_060 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_000890_010--Hb_006132_040 Hb_000890_010--Hb_005610_080 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_000890_010--Hb_044155_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.7234 50.8193 80.9569 24.4518 40.9153 34.1796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8231 9.99208 10.1443 18.2163 19.3585

CAGE analysis