Hb_002291_060

Information

Type -
Description -
Location Contig2291: 51386-56270
Sequence    

Annotation

kegg
ID fve:101302395
description splicing factor 3A subunit 3-like
nr
ID XP_004307025.1
description PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
swissprot
ID Q12874
description Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1
trembl
ID A0A067JRK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25980 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor 3a subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23900: 51384-52576 , PASA_asmbl_23901: 53794-54260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002291_060 0.0 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
2 Hb_000077_120 0.070941469 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
3 Hb_044155_010 0.082573285 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
4 Hb_000139_220 0.0852566406 - - leucine rich repeat-containing protein, putative [Ricinus communis]
5 Hb_000345_490 0.1002735494 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
6 Hb_010287_030 0.1007448476 - - conserved hypothetical protein [Ricinus communis]
7 Hb_172257_010 0.1076889401 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
8 Hb_005610_080 0.1099034842 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000599_170 0.1112134794 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
10 Hb_000102_050 0.1118565063 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
11 Hb_004223_110 0.1149035635 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
12 Hb_033554_020 0.1157205142 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
13 Hb_000024_120 0.1161214713 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
14 Hb_013405_150 0.1171208113 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
15 Hb_006573_160 0.1185739737 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
16 Hb_006132_040 0.1187483943 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
17 Hb_000302_170 0.1193130294 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
18 Hb_000890_010 0.1201773691 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000098_140 0.1205923182 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
20 Hb_002890_150 0.1207325847 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002291_060 Hb_002291_060 Hb_000077_120 Hb_000077_120 Hb_002291_060--Hb_000077_120 Hb_044155_010 Hb_044155_010 Hb_002291_060--Hb_044155_010 Hb_000139_220 Hb_000139_220 Hb_002291_060--Hb_000139_220 Hb_000345_490 Hb_000345_490 Hb_002291_060--Hb_000345_490 Hb_010287_030 Hb_010287_030 Hb_002291_060--Hb_010287_030 Hb_172257_010 Hb_172257_010 Hb_002291_060--Hb_172257_010 Hb_000077_120--Hb_044155_010 Hb_002890_150 Hb_002890_150 Hb_000077_120--Hb_002890_150 Hb_013405_150 Hb_013405_150 Hb_000077_120--Hb_013405_150 Hb_000077_120--Hb_000139_220 Hb_000890_010 Hb_000890_010 Hb_000077_120--Hb_000890_010 Hb_044155_010--Hb_013405_150 Hb_006132_040 Hb_006132_040 Hb_044155_010--Hb_006132_040 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140 Hb_000940_050 Hb_000940_050 Hb_000139_220--Hb_000940_050 Hb_009449_060 Hb_009449_060 Hb_000139_220--Hb_009449_060 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_000024_120 Hb_000024_120 Hb_000345_490--Hb_000024_120 Hb_005610_080 Hb_005610_080 Hb_000345_490--Hb_005610_080 Hb_002902_020 Hb_002902_020 Hb_000345_490--Hb_002902_020 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_005054_190 Hb_005054_190 Hb_000345_490--Hb_005054_190 Hb_004724_370 Hb_004724_370 Hb_010287_030--Hb_004724_370 Hb_000302_170 Hb_000302_170 Hb_010287_030--Hb_000302_170 Hb_008165_030 Hb_008165_030 Hb_010287_030--Hb_008165_030 Hb_001674_040 Hb_001674_040 Hb_010287_030--Hb_001674_040 Hb_030545_030 Hb_030545_030 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160 Hb_005322_050 Hb_005322_050 Hb_172257_010--Hb_005322_050 Hb_000300_550 Hb_000300_550 Hb_172257_010--Hb_000300_550 Hb_152910_010 Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_007163_060 Hb_007163_060 Hb_172257_010--Hb_007163_060 Hb_172257_010--Hb_009449_060 Hb_172257_010--Hb_000302_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.98776 6.77215 10.3742 3.47439 6.889 4.14365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2435 1.45032 1.00146 3.59716 2.57584

CAGE analysis