Hb_000139_220

Information

Type -
Description -
Location Contig139: 248725-250353
Sequence    

Annotation

kegg
ID rcu:RCOM_0913930
description leucine rich repeat-containing protein, putative
nr
ID XP_002517205.1
description leucine rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9M651
description RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2
trembl
ID B9RTY6
description Leucine rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0913930 PE=4 SV=1
Gene Ontology
ID GO:0005635
description ran gtpase-activating protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10633: 248001-248522 , PASA_asmbl_10634: 247655-250711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_220 0.0 - - leucine rich repeat-containing protein, putative [Ricinus communis]
2 Hb_000077_120 0.0791638541 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
3 Hb_002291_060 0.0852566406 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
4 Hb_000940_050 0.0887379257 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
5 Hb_009449_060 0.0905675301 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
6 Hb_172257_010 0.094284093 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
7 Hb_000589_190 0.0982504454 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
8 Hb_004725_030 0.0996520373 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
9 Hb_000098_140 0.0999095077 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
10 Hb_005649_100 0.1005283521 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_044155_010 0.1042030835 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
12 Hb_001005_020 0.1050458128 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
13 Hb_010287_030 0.1054578863 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011344_070 0.1064699785 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
15 Hb_013405_150 0.1074904674 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
16 Hb_007163_060 0.1101541767 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
17 Hb_002615_120 0.1106899437 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
18 Hb_011249_030 0.1109311291 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
19 Hb_001322_020 0.1111384158 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
20 Hb_000994_020 0.1114180368 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000139_220 Hb_000139_220 Hb_000077_120 Hb_000077_120 Hb_000139_220--Hb_000077_120 Hb_002291_060 Hb_002291_060 Hb_000139_220--Hb_002291_060 Hb_000940_050 Hb_000940_050 Hb_000139_220--Hb_000940_050 Hb_009449_060 Hb_009449_060 Hb_000139_220--Hb_009449_060 Hb_172257_010 Hb_172257_010 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_000077_120--Hb_002291_060 Hb_044155_010 Hb_044155_010 Hb_000077_120--Hb_044155_010 Hb_002890_150 Hb_002890_150 Hb_000077_120--Hb_002890_150 Hb_013405_150 Hb_013405_150 Hb_000077_120--Hb_013405_150 Hb_000890_010 Hb_000890_010 Hb_000077_120--Hb_000890_010 Hb_002291_060--Hb_044155_010 Hb_000345_490 Hb_000345_490 Hb_002291_060--Hb_000345_490 Hb_010287_030 Hb_010287_030 Hb_002291_060--Hb_010287_030 Hb_002291_060--Hb_172257_010 Hb_001824_030 Hb_001824_030 Hb_000940_050--Hb_001824_030 Hb_005649_100 Hb_005649_100 Hb_000940_050--Hb_005649_100 Hb_016448_010 Hb_016448_010 Hb_000940_050--Hb_016448_010 Hb_009659_030 Hb_009659_030 Hb_000940_050--Hb_009659_030 Hb_004096_160 Hb_004096_160 Hb_000940_050--Hb_004096_160 Hb_009449_060--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_009449_060--Hb_002909_040 Hb_009449_060--Hb_172257_010 Hb_000958_080 Hb_000958_080 Hb_009449_060--Hb_000958_080 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_007163_060 Hb_007163_060 Hb_009449_060--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_172257_010--Hb_005322_050 Hb_000300_550 Hb_000300_550 Hb_172257_010--Hb_000300_550 Hb_152910_010 Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_172257_010--Hb_007163_060 Hb_000302_170 Hb_000302_170 Hb_172257_010--Hb_000302_170 Hb_020141_040 Hb_020141_040 Hb_000589_190--Hb_020141_040 Hb_008921_010 Hb_008921_010 Hb_000589_190--Hb_008921_010 Hb_000317_510 Hb_000317_510 Hb_000589_190--Hb_000317_510 Hb_103747_020 Hb_103747_020 Hb_000589_190--Hb_103747_020 Hb_000994_020 Hb_000994_020 Hb_000589_190--Hb_000994_020 Hb_002942_210 Hb_002942_210 Hb_000589_190--Hb_002942_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.6878 32.4952 72.9723 24.7281 31.7924 24.7687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.6329 11.5582 11.2907 21.5634 16.5173

CAGE analysis