Hb_000589_190

Information

Type -
Description -
Location Contig589: 160835-166991
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20950g
description actin/actin-like family protein
nr
ID XP_012088935.1
description PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
swissprot
ID Q940Z2
description Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5 PE=1 SV=2
trembl
ID A0A067LJT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01435 PE=3 SV=1
Gene Ontology
ID GO:0031011
description actin-related protein 5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50086: 160817-166996 , PASA_asmbl_50087: 161559-166996
cDNA
(Sanger)
(ID:Location)		 003_D15.ab1: 163950-166996 , 030_H17.ab1: 165008-166996

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_190 0.0 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
2 Hb_020141_040 0.0713626821 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
3 Hb_008921_010 0.0753567861 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
4 Hb_000317_510 0.0787278115 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
5 Hb_103747_020 0.0836258174 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
6 Hb_000994_020 0.0847886742 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
7 Hb_002942_210 0.0848055463 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
8 Hb_003228_100 0.0894698565 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
9 Hb_005649_100 0.0917458423 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_002014_040 0.0920240549 - - site-1 protease, putative [Ricinus communis]
11 Hb_002054_050 0.0920826663 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
12 Hb_025668_010 0.0929055537 - - unnamed protein product [Coffea canephora]
13 Hb_000610_040 0.0943061559 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
14 Hb_004223_110 0.0943686007 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
15 Hb_000300_550 0.0945749848 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
16 Hb_002326_110 0.0946859672 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
17 Hb_027654_020 0.095252384 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
18 Hb_005333_140 0.0970043074 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
19 Hb_001405_190 0.0980035038 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
20 Hb_000139_220 0.0982504454 - - leucine rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000589_190 Hb_000589_190 Hb_020141_040 Hb_020141_040 Hb_000589_190--Hb_020141_040 Hb_008921_010 Hb_008921_010 Hb_000589_190--Hb_008921_010 Hb_000317_510 Hb_000317_510 Hb_000589_190--Hb_000317_510 Hb_103747_020 Hb_103747_020 Hb_000589_190--Hb_103747_020 Hb_000994_020 Hb_000994_020 Hb_000589_190--Hb_000994_020 Hb_002942_210 Hb_002942_210 Hb_000589_190--Hb_002942_210 Hb_020141_040--Hb_103747_020 Hb_002014_040 Hb_002014_040 Hb_020141_040--Hb_002014_040 Hb_000130_420 Hb_000130_420 Hb_020141_040--Hb_000130_420 Hb_025668_010 Hb_025668_010 Hb_020141_040--Hb_025668_010 Hb_020141_040--Hb_002942_210 Hb_002054_050 Hb_002054_050 Hb_008921_010--Hb_002054_050 Hb_000959_230 Hb_000959_230 Hb_008921_010--Hb_000959_230 Hb_008921_010--Hb_002942_210 Hb_001804_110 Hb_001804_110 Hb_008921_010--Hb_001804_110 Hb_139002_010 Hb_139002_010 Hb_008921_010--Hb_139002_010 Hb_000317_510--Hb_103747_020 Hb_000373_080 Hb_000373_080 Hb_000317_510--Hb_000373_080 Hb_002326_110 Hb_002326_110 Hb_000317_510--Hb_002326_110 Hb_000362_170 Hb_000362_170 Hb_000317_510--Hb_000362_170 Hb_001005_030 Hb_001005_030 Hb_000317_510--Hb_001005_030 Hb_000317_510--Hb_002054_050 Hb_103747_020--Hb_002014_040 Hb_002686_040 Hb_002686_040 Hb_103747_020--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_103747_020--Hb_005723_020 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_008226_090 Hb_008226_090 Hb_103747_020--Hb_008226_090 Hb_015026_100 Hb_015026_100 Hb_000994_020--Hb_015026_100 Hb_000046_600 Hb_000046_600 Hb_000994_020--Hb_000046_600 Hb_000260_770 Hb_000260_770 Hb_000994_020--Hb_000260_770 Hb_006501_010 Hb_006501_010 Hb_000994_020--Hb_006501_010 Hb_000302_170 Hb_000302_170 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_002942_210--Hb_002014_040 Hb_002942_210--Hb_139002_010 Hb_002942_210--Hb_025668_010 Hb_000847_080 Hb_000847_080 Hb_002942_210--Hb_000847_080 Hb_001931_030 Hb_001931_030 Hb_002942_210--Hb_001931_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.47068 11.964 21.974 12.6873 15.9067 8.90205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.87848 3.98082 6.50686 9.49768 10.0226

CAGE analysis