Hb_000959_230

Information

Type -
Description -
Location Contig959: 206691-213219
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07080g
description POPTRDRAFT_819875; 26S proteasome regulatory subunit family protein
nr
ID XP_011025554.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
swissprot
ID Q9FIB6
description 26S proteasome non-ATPase regulatory subunit 12 homolog A OS=Arabidopsis thaliana GN=RPN5A PE=1 SV=1
trembl
ID B9HG65
description 26S proteasome regulatory subunit family protein OS=Populus trichocarpa GN=POPTR_0007s07080g PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 12 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63660: 206709-213056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_230 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
2 Hb_001804_110 0.0256174757 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
3 Hb_002054_050 0.0637621822 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
4 Hb_010998_040 0.0661524804 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
5 Hb_043792_010 0.069047469 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
6 Hb_008921_010 0.0723036616 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
7 Hb_007007_040 0.0740131677 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
8 Hb_000130_420 0.0767499671 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
9 Hb_000879_180 0.07722415 - - XPA-binding protein, putative [Ricinus communis]
10 Hb_006688_050 0.077857499 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
11 Hb_010407_050 0.077952452 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
12 Hb_000751_030 0.0792407868 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
13 Hb_001776_060 0.079440731 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
14 Hb_002909_040 0.0796184456 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
15 Hb_001501_080 0.0826694836 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
16 Hb_003746_030 0.085164481 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
17 Hb_002042_030 0.0856634563 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
18 Hb_013394_030 0.0869033759 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
19 Hb_004912_030 0.0883750408 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
20 Hb_001140_030 0.0884171258 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_230 Hb_000959_230 Hb_001804_110 Hb_001804_110 Hb_000959_230--Hb_001804_110 Hb_002054_050 Hb_002054_050 Hb_000959_230--Hb_002054_050 Hb_010998_040 Hb_010998_040 Hb_000959_230--Hb_010998_040 Hb_043792_010 Hb_043792_010 Hb_000959_230--Hb_043792_010 Hb_008921_010 Hb_008921_010 Hb_000959_230--Hb_008921_010 Hb_007007_040 Hb_007007_040 Hb_000959_230--Hb_007007_040 Hb_001804_110--Hb_010998_040 Hb_003746_030 Hb_003746_030 Hb_001804_110--Hb_003746_030 Hb_001804_110--Hb_002054_050 Hb_006688_050 Hb_006688_050 Hb_001804_110--Hb_006688_050 Hb_001140_030 Hb_001140_030 Hb_001804_110--Hb_001140_030 Hb_002054_050--Hb_008921_010 Hb_000317_510 Hb_000317_510 Hb_002054_050--Hb_000317_510 Hb_005463_130 Hb_005463_130 Hb_002054_050--Hb_005463_130 Hb_001005_030 Hb_001005_030 Hb_002054_050--Hb_001005_030 Hb_001501_080 Hb_001501_080 Hb_002054_050--Hb_001501_080 Hb_010998_040--Hb_001140_030 Hb_010362_030 Hb_010362_030 Hb_010998_040--Hb_010362_030 Hb_000139_190 Hb_000139_190 Hb_010998_040--Hb_000139_190 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_002909_040 Hb_002909_040 Hb_043792_010--Hb_002909_040 Hb_002716_060 Hb_002716_060 Hb_043792_010--Hb_002716_060 Hb_000089_210 Hb_000089_210 Hb_043792_010--Hb_000089_210 Hb_001761_120 Hb_001761_120 Hb_043792_010--Hb_001761_120 Hb_002326_040 Hb_002326_040 Hb_043792_010--Hb_002326_040 Hb_002942_210 Hb_002942_210 Hb_008921_010--Hb_002942_210 Hb_000589_190 Hb_000589_190 Hb_008921_010--Hb_000589_190 Hb_008921_010--Hb_001804_110 Hb_139002_010 Hb_139002_010 Hb_008921_010--Hb_139002_010 Hb_003119_090 Hb_003119_090 Hb_007007_040--Hb_003119_090 Hb_000019_190 Hb_000019_190 Hb_007007_040--Hb_000019_190 Hb_000751_030 Hb_000751_030 Hb_007007_040--Hb_000751_030 Hb_023313_040 Hb_023313_040 Hb_007007_040--Hb_023313_040 Hb_003760_030 Hb_003760_030 Hb_007007_040--Hb_003760_030 Hb_000006_010 Hb_000006_010 Hb_007007_040--Hb_000006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.9742 34.9151 60.8445 37.3557 48.1546 28.2014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9541 27.4163 25.2554 22.8146 21.7083

CAGE analysis