Hb_006688_050

Information

Type -
Description -
Location Contig6688: 38404-47399
Sequence    

Annotation

kegg
ID cit:102630339
description cytochrome c oxidase assembly protein COX15-like
nr
ID XP_012087631.1
description PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
swissprot
ID Q9FKT8
description Cytochrome c oxidase assembly protein COX15 OS=Arabidopsis thaliana GN=COX15 PE=2 SV=1
trembl
ID A0A067JLD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25407 PE=3 SV=1
Gene Ontology
ID GO:0016021
description cytochrome c oxidase assembly protein cox15 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53336: 38534-47354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006688_050 0.0 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
2 Hb_010407_050 0.0439095361 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
3 Hb_001488_200 0.0607447124 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
4 Hb_004994_010 0.0622354208 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
5 Hb_005965_030 0.0730689096 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
6 Hb_000928_220 0.073462112 - - PREDICTED: protein SCAI [Jatropha curcas]
7 Hb_002078_110 0.0744981851 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
8 Hb_013394_030 0.0764615558 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
9 Hb_001804_110 0.0769557871 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
10 Hb_000959_230 0.077857499 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
11 Hb_001140_030 0.0787234548 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
12 Hb_005588_090 0.0790648862 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
13 Hb_154580_010 0.0795161147 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
14 Hb_003638_090 0.0827872021 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
15 Hb_003861_050 0.0830980825 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
16 Hb_000935_010 0.0832981317 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
17 Hb_004267_040 0.0833245588 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
18 Hb_002375_010 0.083431611 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
19 Hb_002876_130 0.0834588688 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
20 Hb_004785_100 0.084811334 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006688_050 Hb_006688_050 Hb_010407_050 Hb_010407_050 Hb_006688_050--Hb_010407_050 Hb_001488_200 Hb_001488_200 Hb_006688_050--Hb_001488_200 Hb_004994_010 Hb_004994_010 Hb_006688_050--Hb_004994_010 Hb_005965_030 Hb_005965_030 Hb_006688_050--Hb_005965_030 Hb_000928_220 Hb_000928_220 Hb_006688_050--Hb_000928_220 Hb_002078_110 Hb_002078_110 Hb_006688_050--Hb_002078_110 Hb_010407_050--Hb_004994_010 Hb_010407_050--Hb_001488_200 Hb_000879_180 Hb_000879_180 Hb_010407_050--Hb_000879_180 Hb_003861_050 Hb_003861_050 Hb_010407_050--Hb_003861_050 Hb_001005_030 Hb_001005_030 Hb_010407_050--Hb_001005_030 Hb_019654_040 Hb_019654_040 Hb_001488_200--Hb_019654_040 Hb_003638_090 Hb_003638_090 Hb_001488_200--Hb_003638_090 Hb_002375_010 Hb_002375_010 Hb_001488_200--Hb_002375_010 Hb_000390_320 Hb_000390_320 Hb_001488_200--Hb_000390_320 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_001456_060 Hb_001456_060 Hb_004994_010--Hb_001456_060 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_000339_040 Hb_000339_040 Hb_004994_010--Hb_000339_040 Hb_000160_350 Hb_000160_350 Hb_005965_030--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_005965_030--Hb_003638_090 Hb_022256_060 Hb_022256_060 Hb_005965_030--Hb_022256_060 Hb_000402_080 Hb_000402_080 Hb_000928_220--Hb_000402_080 Hb_002876_130 Hb_002876_130 Hb_000928_220--Hb_002876_130 Hb_000076_160 Hb_000076_160 Hb_000928_220--Hb_000076_160 Hb_000928_220--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_000928_220--Hb_002835_230 Hb_002046_110 Hb_002046_110 Hb_000928_220--Hb_002046_110 Hb_002078_110--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_002078_110--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_002078_110--Hb_131646_010 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.50019 7.40586 10.072 5.83642 10.0386 7.27246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68872 5.80424 5.38114 7.12491 4.0907

CAGE analysis