Hb_000390_320

Information

Type transcription factor
Description TF Family: HSF
Location Contig390: 327933-335178
Sequence    

Annotation

kegg
ID rcu:RCOM_1326840
description Heat shock factor protein HSF8, putative
nr
ID XP_012070226.1
description PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
swissprot
ID Q84T61
description Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1
trembl
ID A0A067L5Z1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02539 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-1e-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39138: 327955-335136 , PASA_asmbl_39139: 333744-335158
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_320 0.0 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
2 Hb_002375_010 0.0472735646 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
3 Hb_000680_090 0.0539788917 - - Protein SEY1, putative [Ricinus communis]
4 Hb_001195_320 0.0596085599 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
5 Hb_143629_110 0.0596192689 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
6 Hb_002329_040 0.0628419416 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
7 Hb_123903_010 0.0632458211 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
8 Hb_004195_200 0.0638047326 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
9 Hb_007576_110 0.0650479419 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
10 Hb_012395_140 0.0662439054 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
11 Hb_000617_180 0.0681574016 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
12 Hb_000975_040 0.0689265783 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
13 Hb_104061_020 0.0690482156 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
14 Hb_001617_060 0.0697876664 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
15 Hb_001550_060 0.0699639443 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
16 Hb_017862_020 0.0706344477 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
17 Hb_009175_020 0.0708636125 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
18 Hb_000116_500 0.0715211609 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
19 Hb_000703_150 0.0717612745 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
20 Hb_000470_070 0.0718263814 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]

Gene co-expression network

sample Hb_000390_320 Hb_000390_320 Hb_002375_010 Hb_002375_010 Hb_000390_320--Hb_002375_010 Hb_000680_090 Hb_000680_090 Hb_000390_320--Hb_000680_090 Hb_001195_320 Hb_001195_320 Hb_000390_320--Hb_001195_320 Hb_143629_110 Hb_143629_110 Hb_000390_320--Hb_143629_110 Hb_002329_040 Hb_002329_040 Hb_000390_320--Hb_002329_040 Hb_123903_010 Hb_123903_010 Hb_000390_320--Hb_123903_010 Hb_004195_200 Hb_004195_200 Hb_002375_010--Hb_004195_200 Hb_000347_070 Hb_000347_070 Hb_002375_010--Hb_000347_070 Hb_007576_110 Hb_007576_110 Hb_002375_010--Hb_007576_110 Hb_000617_180 Hb_000617_180 Hb_002375_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020 Hb_000878_180 Hb_000878_180 Hb_000680_090--Hb_000878_180 Hb_000084_250 Hb_000084_250 Hb_000680_090--Hb_000084_250 Hb_000162_280 Hb_000162_280 Hb_000680_090--Hb_000162_280 Hb_002615_090 Hb_002615_090 Hb_000680_090--Hb_002615_090 Hb_003640_040 Hb_003640_040 Hb_000680_090--Hb_003640_040 Hb_000166_130 Hb_000166_130 Hb_001195_320--Hb_000166_130 Hb_003371_110 Hb_003371_110 Hb_001195_320--Hb_003371_110 Hb_001195_320--Hb_002329_040 Hb_003029_110 Hb_003029_110 Hb_001195_320--Hb_003029_110 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_000183_020 Hb_000183_020 Hb_001195_320--Hb_000183_020 Hb_032202_200 Hb_032202_200 Hb_143629_110--Hb_032202_200 Hb_143629_110--Hb_123903_010 Hb_001617_060 Hb_001617_060 Hb_143629_110--Hb_001617_060 Hb_025477_040 Hb_025477_040 Hb_143629_110--Hb_025477_040 Hb_143629_110--Hb_000617_180 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_002329_040--Hb_000183_020 Hb_009175_020 Hb_009175_020 Hb_123903_010--Hb_009175_020 Hb_002815_030 Hb_002815_030 Hb_123903_010--Hb_002815_030 Hb_000975_040 Hb_000975_040 Hb_123903_010--Hb_000975_040 Hb_123903_010--Hb_032202_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.609 10.9816 8.47503 9.10384 14.2583 13.9036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94289 6.78327 10.327 13.3328 7.24907

CAGE analysis