Hb_002815_030

Information

Type -
Description -
Location Contig2815: 84869-92623
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G048000g
description hypothetical protein
nr
ID KDO61534.1
description hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
swissprot
ID P55653
description Probable succinate-semialdehyde dehydrogenase [NADP(+)] OS=Rhizobium sp. (strain NGR234) GN=gabD PE=3 SV=1
trembl
ID A0A067FDJ7
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0095162mg PE=3 SV=1
Gene Ontology
ID GO:0009570
description succinate-semialdehyde mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29467: 85035-131762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002815_030 0.0 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
2 Hb_001343_040 0.0459409893 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
3 Hb_000008_290 0.047090523 - - PREDICTED: protein SAND [Jatropha curcas]
4 Hb_000579_230 0.0492785138 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
5 Hb_012395_140 0.0518353541 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
6 Hb_000395_070 0.0543402931 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
7 Hb_000592_030 0.055278616 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
8 Hb_009270_020 0.062042561 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
9 Hb_123903_010 0.0620542616 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
10 Hb_000613_050 0.0623938482 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
11 Hb_001062_010 0.0639435064 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
12 Hb_001814_030 0.0643352604 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
13 Hb_002681_090 0.06514699 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
14 Hb_002329_040 0.0652159619 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_000740_100 0.0663725594 - - calpain, putative [Ricinus communis]
16 Hb_004676_010 0.067783024 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
17 Hb_025477_040 0.0680545136 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
18 Hb_006355_090 0.0696060655 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
19 Hb_009175_020 0.0703942278 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
20 Hb_001473_180 0.0727981796 - - glutathione reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002815_030 Hb_002815_030 Hb_001343_040 Hb_001343_040 Hb_002815_030--Hb_001343_040 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_002815_030--Hb_012395_140 Hb_000395_070 Hb_000395_070 Hb_002815_030--Hb_000395_070 Hb_000592_030 Hb_000592_030 Hb_002815_030--Hb_000592_030 Hb_000613_050 Hb_000613_050 Hb_001343_040--Hb_000613_050 Hb_001343_040--Hb_000592_030 Hb_001343_040--Hb_000395_070 Hb_001814_030 Hb_001814_030 Hb_001343_040--Hb_001814_030 Hb_001343_040--Hb_012395_140 Hb_000008_290--Hb_000592_030 Hb_000890_060 Hb_000890_060 Hb_000008_290--Hb_000890_060 Hb_000008_290--Hb_000613_050 Hb_000617_180 Hb_000617_180 Hb_000008_290--Hb_000617_180 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010 Hb_000579_230--Hb_012395_140 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_012395_140--Hb_001814_030 Hb_000740_100 Hb_000740_100 Hb_000395_070--Hb_000740_100 Hb_003060_060 Hb_003060_060 Hb_000395_070--Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_000395_070--Hb_000412_010 Hb_000592_030--Hb_000613_050 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.4911 55.6908 36.8371 49.8907 59.4206 67.122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.2491 28.8106 41.519 79.48 53.547

CAGE analysis