Hb_001550_060

Information

Type -
Description -
Location Contig1550: 147831-168858
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000783mg
description hypothetical protein
nr
ID XP_012066348.1
description PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
swissprot
ID Q9SJF0
description Serine/threonine-protein phosphatase BSL2 OS=Arabidopsis thaliana GN=BSL2 PE=1 SV=2
trembl
ID A0A067L3F3
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_23904 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase bsl3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13453: 147822-168548 , PASA_asmbl_13454: 154516-154750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001550_060 0.0 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
2 Hb_006420_040 0.0279630462 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
3 Hb_012395_140 0.0464800714 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
4 Hb_003206_130 0.0541756688 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
5 Hb_000025_320 0.0548792053 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
6 Hb_001195_320 0.0563311376 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
7 Hb_000395_070 0.0589197442 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
8 Hb_001814_030 0.0602570536 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
9 Hb_000412_010 0.0603400696 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_004182_050 0.0604113454 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
11 Hb_009615_170 0.0617727556 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
12 Hb_000614_210 0.061872269 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
13 Hb_159558_010 0.0627802756 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
14 Hb_000166_130 0.0632243537 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000579_230 0.0637308363 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
16 Hb_000441_120 0.0642136394 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000671_070 0.065178177 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
18 Hb_000035_290 0.0665456377 - - RNA recognition motif-containing family protein [Populus trichocarpa]
19 Hb_003029_110 0.0666687693 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
20 Hb_009545_100 0.0669901157 - - PREDICTED: protein OBERON 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001550_060 Hb_001550_060 Hb_006420_040 Hb_006420_040 Hb_001550_060--Hb_006420_040 Hb_012395_140 Hb_012395_140 Hb_001550_060--Hb_012395_140 Hb_003206_130 Hb_003206_130 Hb_001550_060--Hb_003206_130 Hb_000025_320 Hb_000025_320 Hb_001550_060--Hb_000025_320 Hb_001195_320 Hb_001195_320 Hb_001550_060--Hb_001195_320 Hb_000395_070 Hb_000395_070 Hb_001550_060--Hb_000395_070 Hb_000441_120 Hb_000441_120 Hb_006420_040--Hb_000441_120 Hb_000671_070 Hb_000671_070 Hb_006420_040--Hb_000671_070 Hb_006420_040--Hb_000025_320 Hb_006420_040--Hb_003206_130 Hb_009503_030 Hb_009503_030 Hb_006420_040--Hb_009503_030 Hb_012395_140--Hb_000395_070 Hb_000579_230 Hb_000579_230 Hb_012395_140--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_001814_030 Hb_001814_030 Hb_012395_140--Hb_001814_030 Hb_003470_080 Hb_003470_080 Hb_003206_130--Hb_003470_080 Hb_003206_130--Hb_000441_120 Hb_159558_010 Hb_159558_010 Hb_003206_130--Hb_159558_010 Hb_000614_210 Hb_000614_210 Hb_003206_130--Hb_000614_210 Hb_000025_320--Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000025_320--Hb_001191_120 Hb_000960_100 Hb_000960_100 Hb_000025_320--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000025_320--Hb_002022_070 Hb_000166_130 Hb_000166_130 Hb_001195_320--Hb_000166_130 Hb_003371_110 Hb_003371_110 Hb_001195_320--Hb_003371_110 Hb_001195_320--Hb_002329_040 Hb_003029_110 Hb_003029_110 Hb_001195_320--Hb_003029_110 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_000183_020 Hb_000183_020 Hb_001195_320--Hb_000183_020 Hb_000740_100 Hb_000740_100 Hb_000395_070--Hb_000740_100 Hb_003060_060 Hb_003060_060 Hb_000395_070--Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_000395_070--Hb_000412_010 Hb_000395_070--Hb_002815_030 Hb_000395_070--Hb_000579_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6898 21.2705 11.1658 12.3724 20.768 18.2511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8 10.9727 16.7433 17.8785 16.3871

CAGE analysis