Hb_002022_070

Information

Type -
Description -
Location Contig2022: 102546-110900
Sequence    

Annotation

kegg
ID rcu:RCOM_0741740
description histidyl-tRNA synthetase, putative (EC:6.1.1.21)
nr
ID XP_012076990.1
description PREDICTED: histidine--tRNA ligase [Jatropha curcas]
swissprot
ID P93422
description Histidine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os05g0150900 PE=2 SV=2
trembl
ID A0A067LMG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17211 PE=3 SV=1
Gene Ontology
ID GO:0005737
description histidine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20540: 102225-110769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002022_070 0.0 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
2 Hb_000960_100 0.0536072855 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
3 Hb_000025_320 0.0561967029 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
4 Hb_004884_010 0.0642885015 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
5 Hb_001021_200 0.0658993336 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
6 Hb_004108_100 0.0675394221 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
7 Hb_000028_510 0.0686914343 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
8 Hb_001143_250 0.0688162296 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
9 Hb_003929_140 0.0698313839 - - DNA binding protein, putative [Ricinus communis]
10 Hb_002235_300 0.0712636993 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
11 Hb_002615_090 0.0713705136 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
12 Hb_000345_150 0.0719848633 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
13 Hb_004629_010 0.0733420479 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
14 Hb_133047_010 0.0734906766 - - xanthine dehydrogenase, putative [Ricinus communis]
15 Hb_000671_070 0.0750287913 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
16 Hb_000012_140 0.0761088514 - - conserved hypothetical protein [Ricinus communis]
17 Hb_148909_030 0.0780946575 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
18 Hb_034243_020 0.0782446161 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
19 Hb_000577_030 0.0793086032 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
20 Hb_005104_010 0.0794711439 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002022_070 Hb_002022_070 Hb_000960_100 Hb_000960_100 Hb_002022_070--Hb_000960_100 Hb_000025_320 Hb_000025_320 Hb_002022_070--Hb_000025_320 Hb_004884_010 Hb_004884_010 Hb_002022_070--Hb_004884_010 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_004108_100 Hb_004108_100 Hb_002022_070--Hb_004108_100 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510 Hb_002615_090 Hb_002615_090 Hb_000960_100--Hb_002615_090 Hb_000960_100--Hb_004108_100 Hb_000960_100--Hb_000025_320 Hb_002235_300 Hb_002235_300 Hb_000960_100--Hb_002235_300 Hb_001235_230 Hb_001235_230 Hb_000960_100--Hb_001235_230 Hb_000671_070 Hb_000671_070 Hb_000025_320--Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000025_320--Hb_001191_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_006420_040 Hb_006420_040 Hb_000025_320--Hb_006420_040 Hb_133047_010 Hb_133047_010 Hb_004884_010--Hb_133047_010 Hb_034243_020 Hb_034243_020 Hb_004884_010--Hb_034243_020 Hb_010315_090 Hb_010315_090 Hb_004884_010--Hb_010315_090 Hb_148909_030 Hb_148909_030 Hb_004884_010--Hb_148909_030 Hb_004543_030 Hb_004543_030 Hb_004884_010--Hb_004543_030 Hb_000577_030 Hb_000577_030 Hb_001021_200--Hb_000577_030 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_005104_010 Hb_005104_010 Hb_001021_200--Hb_005104_010 Hb_000917_160 Hb_000917_160 Hb_001021_200--Hb_000917_160 Hb_000236_470 Hb_000236_470 Hb_001021_200--Hb_000236_470 Hb_128743_010 Hb_128743_010 Hb_004108_100--Hb_128743_010 Hb_004108_100--Hb_000025_320 Hb_006816_430 Hb_006816_430 Hb_004108_100--Hb_006816_430 Hb_144831_010 Hb_144831_010 Hb_004108_100--Hb_144831_010 Hb_003929_140 Hb_003929_140 Hb_000028_510--Hb_003929_140 Hb_000028_510--Hb_001021_200 Hb_002267_140 Hb_002267_140 Hb_000028_510--Hb_002267_140 Hb_004629_010 Hb_004629_010 Hb_000028_510--Hb_004629_010 Hb_000028_510--Hb_002615_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4243 42.5191 22.6133 14.2991 38.2503 34.2803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3101 10.5464 22.4479 21.9725 26.9477

CAGE analysis