Hb_000577_030

Information

Type -
Description -
Location Contig577: 108497-139994
Sequence    

Annotation

kegg
ID tcc:TCM_041172
description Ubiquitin-specific protease 12 isoform 1
nr
ID KHG28420.1
description Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
swissprot
ID Q84WU2
description Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1
trembl
ID A0A0B0PTR8
description Ubiquitin carboxyl-terminal hydrolase OS=Gossypium arboreum GN=F383_13455 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49691: 108506-125817 , PASA_asmbl_49692: 108590-114438 , PASA_asmbl_49693: 125368-140578 , PASA_asmbl_49694: 112191-114464 , PASA_asmbl_49696: 116512-116765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000577_030 0.0 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
2 Hb_001021_200 0.0511501491 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
3 Hb_001047_200 0.0518149659 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
4 Hb_000184_150 0.0680319331 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
5 Hb_000917_160 0.0711560236 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
6 Hb_032920_130 0.0713477214 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
7 Hb_118840_050 0.0714855978 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
8 Hb_006618_090 0.0726558427 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
9 Hb_002571_030 0.0743504919 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
10 Hb_007929_080 0.0784156072 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
11 Hb_002022_070 0.0793086032 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
12 Hb_000960_050 0.0799568735 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
13 Hb_004629_010 0.0806028596 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
14 Hb_000191_130 0.0820377206 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
15 Hb_003040_020 0.0831591787 - - PREDICTED: protein cereblon [Jatropha curcas]
16 Hb_000236_470 0.0840276518 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
17 Hb_009771_110 0.0844134707 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
18 Hb_000010_360 0.0845234108 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
19 Hb_000823_030 0.0860385062 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
20 Hb_000261_030 0.0863598585 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]

Gene co-expression network

sample Hb_000577_030 Hb_000577_030 Hb_001021_200 Hb_001021_200 Hb_000577_030--Hb_001021_200 Hb_001047_200 Hb_001047_200 Hb_000577_030--Hb_001047_200 Hb_000184_150 Hb_000184_150 Hb_000577_030--Hb_000184_150 Hb_000917_160 Hb_000917_160 Hb_000577_030--Hb_000917_160 Hb_032920_130 Hb_032920_130 Hb_000577_030--Hb_032920_130 Hb_118840_050 Hb_118840_050 Hb_000577_030--Hb_118840_050 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_002022_070 Hb_002022_070 Hb_001021_200--Hb_002022_070 Hb_005104_010 Hb_005104_010 Hb_001021_200--Hb_005104_010 Hb_001021_200--Hb_000917_160 Hb_000236_470 Hb_000236_470 Hb_001021_200--Hb_000236_470 Hb_000823_030 Hb_000823_030 Hb_001047_200--Hb_000823_030 Hb_001047_200--Hb_000236_470 Hb_001047_200--Hb_000184_150 Hb_001047_200--Hb_001021_200 Hb_005542_050 Hb_005542_050 Hb_001047_200--Hb_005542_050 Hb_000184_150--Hb_000823_030 Hb_001723_140 Hb_001723_140 Hb_000184_150--Hb_001723_140 Hb_000184_150--Hb_000917_160 Hb_006618_090 Hb_006618_090 Hb_000184_150--Hb_006618_090 Hb_000062_470 Hb_000062_470 Hb_000917_160--Hb_000062_470 Hb_000191_130 Hb_000191_130 Hb_000917_160--Hb_000191_130 Hb_000917_160--Hb_118840_050 Hb_000406_230 Hb_000406_230 Hb_000917_160--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_000917_160--Hb_007558_070 Hb_010417_060 Hb_010417_060 Hb_000917_160--Hb_010417_060 Hb_032920_130--Hb_010417_060 Hb_000261_030 Hb_000261_030 Hb_032920_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_032920_130--Hb_002044_170 Hb_000035_410 Hb_000035_410 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_001235_230 Hb_001235_230 Hb_032920_130--Hb_001235_230 Hb_118840_050--Hb_000191_130 Hb_118840_050--Hb_000062_470 Hb_000230_430 Hb_000230_430 Hb_118840_050--Hb_000230_430 Hb_118840_050--Hb_001047_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0735 34.1433 23.7849 13.3368 29.5401 25.6205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.67486 6.02828 13.2375 22.492 15.8043

CAGE analysis