Hb_000823_030

Information

Type -
Description -
Location Contig823: 52115-76607
Sequence    

Annotation

kegg
ID rcu:RCOM_0553410
description DNA-directed RNA polymerase, putative
nr
ID XP_012079063.1
description PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
swissprot
ID Q9NVU0
description DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens GN=POLR3E PE=1 SV=1
trembl
ID A0A067K6S2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12253 PE=4 SV=1
Gene Ontology
ID GO:0003899
description dna-directed rna polymerase iii subunit rpc5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59665: 52183-61133 , PASA_asmbl_59666: 58235-58436 , PASA_asmbl_59668: 73848-76508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000823_030 0.0 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
2 Hb_001047_200 0.0549841637 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
3 Hb_003142_040 0.0713459108 - - Sf3a3 [Gossypium arboreum]
4 Hb_088144_020 0.0718053085 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
5 Hb_007426_060 0.0719525853 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
6 Hb_000184_150 0.0720776131 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
7 Hb_001171_030 0.0730261854 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
8 Hb_000862_040 0.0738169532 - - ara4-interacting protein, putative [Ricinus communis]
9 Hb_001673_050 0.0746393864 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
10 Hb_000608_230 0.0756182385 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
11 Hb_000236_470 0.0758483205 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
12 Hb_003943_020 0.0761466256 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
13 Hb_005542_050 0.0801533377 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
14 Hb_005357_260 0.08059064 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
15 Hb_005542_140 0.0823103398 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
16 Hb_002217_430 0.0826352577 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
17 Hb_007818_030 0.0831053971 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
18 Hb_001277_020 0.0832743572 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
19 Hb_029695_020 0.0838030984 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
20 Hb_140049_080 0.0844855906 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]

Gene co-expression network

sample Hb_000823_030 Hb_000823_030 Hb_001047_200 Hb_001047_200 Hb_000823_030--Hb_001047_200 Hb_003142_040 Hb_003142_040 Hb_000823_030--Hb_003142_040 Hb_088144_020 Hb_088144_020 Hb_000823_030--Hb_088144_020 Hb_007426_060 Hb_007426_060 Hb_000823_030--Hb_007426_060 Hb_000184_150 Hb_000184_150 Hb_000823_030--Hb_000184_150 Hb_001171_030 Hb_001171_030 Hb_000823_030--Hb_001171_030 Hb_000577_030 Hb_000577_030 Hb_001047_200--Hb_000577_030 Hb_000236_470 Hb_000236_470 Hb_001047_200--Hb_000236_470 Hb_001047_200--Hb_000184_150 Hb_001021_200 Hb_001021_200 Hb_001047_200--Hb_001021_200 Hb_005542_050 Hb_005542_050 Hb_001047_200--Hb_005542_050 Hb_002968_070 Hb_002968_070 Hb_003142_040--Hb_002968_070 Hb_003142_040--Hb_001171_030 Hb_001953_120 Hb_001953_120 Hb_003142_040--Hb_001953_120 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_000189_630 Hb_000189_630 Hb_003142_040--Hb_000189_630 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140 Hb_088144_020--Hb_003142_040 Hb_088144_020--Hb_002968_070 Hb_088144_020--Hb_001953_120 Hb_001221_180 Hb_001221_180 Hb_088144_020--Hb_001221_180 Hb_088144_020--Hb_001171_030 Hb_007818_030 Hb_007818_030 Hb_007426_060--Hb_007818_030 Hb_001534_210 Hb_001534_210 Hb_007426_060--Hb_001534_210 Hb_001673_050 Hb_001673_050 Hb_007426_060--Hb_001673_050 Hb_005542_140 Hb_005542_140 Hb_007426_060--Hb_005542_140 Hb_000099_040 Hb_000099_040 Hb_007426_060--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_007426_060--Hb_000176_100 Hb_000184_150--Hb_000577_030 Hb_000184_150--Hb_001723_140 Hb_000917_160 Hb_000917_160 Hb_000184_150--Hb_000917_160 Hb_006618_090 Hb_006618_090 Hb_000184_150--Hb_006618_090 Hb_001171_030--Hb_002968_070 Hb_001171_030--Hb_001723_140 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.48766 15.0164 9.13041 6.23776 10.4001 8.1417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.49015 3.926 4.39483 13.5023 7.11861

CAGE analysis