Hb_007426_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig7426: 77216-80122
Sequence    

Annotation

kegg
ID tcc:TCM_032179
description LRR and NB-ARC domains-containing disease resistance protein, putative
nr
ID CDP14717.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID A0A068V2F6
description Coffea canephora DH200=94 genomic scaffold, scaffold_91 OS=Coffea canephora GN=GSCOC_T00042139001 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr and nb-arc domains-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56536: 77280-77451 , PASA_asmbl_56537: 77621-77846 , PASA_asmbl_56538: 78124-78592 , PASA_asmbl_56540: 79765-80126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_060 0.0 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
2 Hb_007818_030 0.0502435002 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
3 Hb_001534_210 0.0507499548 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
4 Hb_001673_050 0.0582012965 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
5 Hb_005542_140 0.0587571999 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
6 Hb_000099_040 0.0634851419 - - unnamed protein product [Coffea canephora]
7 Hb_000176_100 0.0656613291 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
8 Hb_000703_200 0.0671656796 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
9 Hb_001723_010 0.0675782967 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
10 Hb_023226_080 0.0690026037 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
11 Hb_002542_130 0.070569562 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
12 Hb_000823_030 0.0719525853 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
13 Hb_004976_010 0.072112143 - - hypothetical protein RCOM_1429110 [Ricinus communis]
14 Hb_000862_040 0.0726382618 - - ara4-interacting protein, putative [Ricinus communis]
15 Hb_000703_130 0.073183079 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_000340_030 0.0744571807 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
17 Hb_000236_470 0.0747049259 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
18 Hb_002374_290 0.0750217561 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
19 Hb_029977_040 0.075762686 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
20 Hb_001277_020 0.0766431846 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]

Gene co-expression network

sample Hb_007426_060 Hb_007426_060 Hb_007818_030 Hb_007818_030 Hb_007426_060--Hb_007818_030 Hb_001534_210 Hb_001534_210 Hb_007426_060--Hb_001534_210 Hb_001673_050 Hb_001673_050 Hb_007426_060--Hb_001673_050 Hb_005542_140 Hb_005542_140 Hb_007426_060--Hb_005542_140 Hb_000099_040 Hb_000099_040 Hb_007426_060--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_007426_060--Hb_000176_100 Hb_000703_130 Hb_000703_130 Hb_007818_030--Hb_000703_130 Hb_007818_030--Hb_001673_050 Hb_001221_090 Hb_001221_090 Hb_007818_030--Hb_001221_090 Hb_000526_060 Hb_000526_060 Hb_007818_030--Hb_000526_060 Hb_007818_030--Hb_000176_100 Hb_004032_230 Hb_004032_230 Hb_001534_210--Hb_004032_230 Hb_003849_140 Hb_003849_140 Hb_001534_210--Hb_003849_140 Hb_001534_210--Hb_000099_040 Hb_001231_090 Hb_001231_090 Hb_001534_210--Hb_001231_090 Hb_009302_030 Hb_009302_030 Hb_001534_210--Hb_009302_030 Hb_002849_170 Hb_002849_170 Hb_001673_050--Hb_002849_170 Hb_001673_050--Hb_000099_040 Hb_001668_010 Hb_001668_010 Hb_001673_050--Hb_001668_010 Hb_004976_010 Hb_004976_010 Hb_001673_050--Hb_004976_010 Hb_004429_010 Hb_004429_010 Hb_001673_050--Hb_004429_010 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_005542_140--Hb_001668_010 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_000243_210 Hb_000243_210 Hb_000099_040--Hb_000243_210 Hb_001318_070 Hb_001318_070 Hb_000099_040--Hb_001318_070 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_005357_260 Hb_005357_260 Hb_000176_100--Hb_005357_260 Hb_000176_100--Hb_000703_130 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59187 4.17693 2.26391 1.46739 2.32309 2.03405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.975963 1.38241 1.21983 2.57797 2.06592

CAGE analysis