Hb_000526_060

Information

Type -
Description -
Location Contig526: 48805-61975
Sequence    

Annotation

kegg
ID rcu:RCOM_1527060
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012065515.1
description PREDICTED: clustered mitochondria protein [Jatropha curcas]
swissprot
ID F4J5S1
description Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=1
trembl
ID A0A067L4N6
description Clustered mitochondria protein homolog OS=Jatropha curcas GN=JCGZ_16718 PE=3 SV=1
Gene Ontology
ID GO:0003743
description clustered mitochondria protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46993: 48810-62004 , PASA_asmbl_46994: 54353-54526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000526_060 0.0 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
2 Hb_000896_060 0.0488666483 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000117_070 0.0650852722 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
4 Hb_007818_030 0.0676817367 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
5 Hb_120470_010 0.0692040619 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
6 Hb_155159_010 0.079396165 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
7 Hb_000703_130 0.079881975 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
8 Hb_014834_060 0.0811912514 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
9 Hb_012368_100 0.0819156729 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
10 Hb_044653_020 0.0825882498 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
11 Hb_002073_280 0.0827081165 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
12 Hb_002282_060 0.0841007244 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
13 Hb_014720_020 0.0843196005 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
14 Hb_000094_320 0.0865585319 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
15 Hb_000123_350 0.0877644653 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
16 Hb_002687_090 0.0885690115 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
17 Hb_007576_220 0.0901085204 - - PREDICTED: kanadaptin [Jatropha curcas]
18 Hb_000218_020 0.0908790404 - - synaptosomal associated protein, putative [Ricinus communis]
19 Hb_003120_070 0.0928824055 - - ATP binding protein, putative [Ricinus communis]
20 Hb_012082_010 0.0943258504 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000526_060 Hb_000526_060 Hb_000896_060 Hb_000896_060 Hb_000526_060--Hb_000896_060 Hb_000117_070 Hb_000117_070 Hb_000526_060--Hb_000117_070 Hb_007818_030 Hb_007818_030 Hb_000526_060--Hb_007818_030 Hb_120470_010 Hb_120470_010 Hb_000526_060--Hb_120470_010 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000703_130 Hb_000703_130 Hb_000526_060--Hb_000703_130 Hb_014834_060 Hb_014834_060 Hb_000896_060--Hb_014834_060 Hb_000896_060--Hb_000117_070 Hb_044653_020 Hb_044653_020 Hb_000896_060--Hb_044653_020 Hb_012368_100 Hb_012368_100 Hb_000896_060--Hb_012368_100 Hb_000123_350 Hb_000123_350 Hb_000896_060--Hb_000123_350 Hb_000117_070--Hb_012368_100 Hb_000117_070--Hb_044653_020 Hb_000117_070--Hb_120470_010 Hb_000117_070--Hb_000703_130 Hb_007426_060 Hb_007426_060 Hb_007818_030--Hb_007426_060 Hb_007818_030--Hb_000703_130 Hb_001673_050 Hb_001673_050 Hb_007818_030--Hb_001673_050 Hb_001221_090 Hb_001221_090 Hb_007818_030--Hb_001221_090 Hb_000176_100 Hb_000176_100 Hb_007818_030--Hb_000176_100 Hb_011791_020 Hb_011791_020 Hb_120470_010--Hb_011791_020 Hb_120470_010--Hb_007818_030 Hb_002687_090 Hb_002687_090 Hb_120470_010--Hb_002687_090 Hb_004032_040 Hb_004032_040 Hb_120470_010--Hb_004032_040 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_007283_030 Hb_007283_030 Hb_155159_010--Hb_007283_030 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_155159_010--Hb_010661_020 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000703_130--Hb_000176_100 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_000703_130--Hb_002687_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0406 69.9174 23.1622 15.8808 31.858 23.5387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.09965 10.2772 10.0566 27.0424 26.3257

CAGE analysis