Hb_002687_090

Information

Type -
Description -
Location Contig2687: 136599-141852
Sequence    

Annotation

kegg
ID pop:POPTR_0008s00320g
description hypothetical protein
nr
ID XP_012068542.1
description PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
swissprot
ID Q9Y5B6
description PAX3- and PAX7-binding protein 1 OS=Homo sapiens GN=PAXBP1 PE=1 SV=2
trembl
ID A0A067L8L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24458 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pax3- and pax7-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_090 0.0 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
2 Hb_013405_160 0.0483685933 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
3 Hb_000703_130 0.0639246455 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
4 Hb_007818_030 0.0745945919 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
5 Hb_000086_050 0.0749815837 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
6 Hb_000579_010 0.0761625759 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
7 Hb_007283_030 0.0786204813 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
8 Hb_000645_130 0.0816804975 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
9 Hb_009302_030 0.0847689874 - - hypothetical protein RCOM_1176340 [Ricinus communis]
10 Hb_004659_090 0.0856431996 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
11 Hb_012368_100 0.0861516454 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
12 Hb_155159_010 0.0867678257 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
13 Hb_000117_070 0.0869002536 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
14 Hb_001221_090 0.0870738874 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
15 Hb_011202_030 0.0878942866 - - arsenite-resistance protein, putative [Ricinus communis]
16 Hb_011689_030 0.0880452581 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
17 Hb_000003_410 0.0881924793 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
18 Hb_000526_060 0.0885690115 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
19 Hb_000265_090 0.0890687239 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
20 Hb_120470_010 0.090716649 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002687_090 Hb_002687_090 Hb_013405_160 Hb_013405_160 Hb_002687_090--Hb_013405_160 Hb_000703_130 Hb_000703_130 Hb_002687_090--Hb_000703_130 Hb_007818_030 Hb_007818_030 Hb_002687_090--Hb_007818_030 Hb_000086_050 Hb_000086_050 Hb_002687_090--Hb_000086_050 Hb_000579_010 Hb_000579_010 Hb_002687_090--Hb_000579_010 Hb_007283_030 Hb_007283_030 Hb_002687_090--Hb_007283_030 Hb_013405_160--Hb_000579_010 Hb_013405_160--Hb_000703_130 Hb_000083_070 Hb_000083_070 Hb_013405_160--Hb_000083_070 Hb_000377_050 Hb_000377_050 Hb_013405_160--Hb_000377_050 Hb_000645_130 Hb_000645_130 Hb_013405_160--Hb_000645_130 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000703_130--Hb_000579_010 Hb_007426_060 Hb_007426_060 Hb_007818_030--Hb_007426_060 Hb_001673_050 Hb_001673_050 Hb_007818_030--Hb_001673_050 Hb_001221_090 Hb_001221_090 Hb_007818_030--Hb_001221_090 Hb_000526_060 Hb_000526_060 Hb_007818_030--Hb_000526_060 Hb_007818_030--Hb_000176_100 Hb_009449_090 Hb_009449_090 Hb_000086_050--Hb_009449_090 Hb_000086_050--Hb_007283_030 Hb_007576_220 Hb_007576_220 Hb_000086_050--Hb_007576_220 Hb_007576_230 Hb_007576_230 Hb_000086_050--Hb_007576_230 Hb_155159_010 Hb_155159_010 Hb_000086_050--Hb_155159_010 Hb_003939_060 Hb_003939_060 Hb_000579_010--Hb_003939_060 Hb_000958_050 Hb_000958_050 Hb_000579_010--Hb_000958_050 Hb_000579_010--Hb_000083_070 Hb_000099_040 Hb_000099_040 Hb_000579_010--Hb_000099_040 Hb_007818_040 Hb_007818_040 Hb_007283_030--Hb_007818_040 Hb_007283_030--Hb_155159_010 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_007283_030--Hb_007576_230 Hb_007283_030--Hb_000377_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2434 6.35402 3.20072 1.92881 3.75627 2.36426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.986304 0.920429 1.6421 2.72884 4.34621

CAGE analysis