Hb_000265_090

Information

Type -
Description -
Location Contig265: 114603-118242
Sequence    

Annotation

kegg
ID rcu:RCOM_1211420
description RNA binding protein, putative
nr
ID XP_012083985.1
description PREDICTED: flowering time control protein FPA [Jatropha curcas]
swissprot
ID Q8LPQ9
description Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2
trembl
ID A0A067L9N1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15026 PE=4 SV=1
Gene Ontology
ID GO:0000166
description flowering time control protein fpa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27689: 114687-118301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_090 0.0 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
2 Hb_000703_130 0.0434623051 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
3 Hb_011242_060 0.064080928 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
4 Hb_000665_230 0.0685402992 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
5 Hb_005188_040 0.0696334215 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
6 Hb_010712_040 0.0722669536 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curcas]
7 Hb_000836_020 0.0724437043 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
8 Hb_009476_090 0.0739363569 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
9 Hb_000176_100 0.0744913581 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
10 Hb_003581_170 0.0751161612 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
11 Hb_002027_280 0.0756360576 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
12 Hb_011689_030 0.0758078611 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
13 Hb_001231_090 0.0759060747 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
14 Hb_005832_010 0.0782119594 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
15 Hb_003805_040 0.079747375 - - Sacsin [Glycine soja]
16 Hb_000069_470 0.0800923291 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
17 Hb_000579_010 0.0807882656 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
18 Hb_155159_010 0.0819783141 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
19 Hb_001951_170 0.0822220485 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
20 Hb_003939_060 0.0829036084 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000265_090 Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000265_090--Hb_000703_130 Hb_011242_060 Hb_011242_060 Hb_000265_090--Hb_011242_060 Hb_000665_230 Hb_000665_230 Hb_000265_090--Hb_000665_230 Hb_005188_040 Hb_005188_040 Hb_000265_090--Hb_005188_040 Hb_010712_040 Hb_010712_040 Hb_000265_090--Hb_010712_040 Hb_000836_020 Hb_000836_020 Hb_000265_090--Hb_000836_020 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090 Hb_000069_470 Hb_000069_470 Hb_011242_060--Hb_000069_470 Hb_003581_170 Hb_003581_170 Hb_011242_060--Hb_003581_170 Hb_003729_030 Hb_003729_030 Hb_011242_060--Hb_003729_030 Hb_011242_060--Hb_000836_020 Hb_000321_150 Hb_000321_150 Hb_011242_060--Hb_000321_150 Hb_011689_030 Hb_011689_030 Hb_000665_230--Hb_011689_030 Hb_003805_040 Hb_003805_040 Hb_000665_230--Hb_003805_040 Hb_009486_170 Hb_009486_170 Hb_000665_230--Hb_009486_170 Hb_000665_230--Hb_000176_100 Hb_001133_030 Hb_001133_030 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110 Hb_002542_130 Hb_002542_130 Hb_005188_040--Hb_002542_130 Hb_004785_030 Hb_004785_030 Hb_005188_040--Hb_004785_030 Hb_001545_150 Hb_001545_150 Hb_005188_040--Hb_001545_150 Hb_005188_040--Hb_011242_060 Hb_009028_010 Hb_009028_010 Hb_005188_040--Hb_009028_010 Hb_000661_130 Hb_000661_130 Hb_010712_040--Hb_000661_130 Hb_010712_040--Hb_011242_060 Hb_006117_080 Hb_006117_080 Hb_010712_040--Hb_006117_080 Hb_010712_040--Hb_000703_130 Hb_010712_040--Hb_000836_020 Hb_000836_020--Hb_003581_170 Hb_001699_280 Hb_001699_280 Hb_000836_020--Hb_001699_280 Hb_000836_020--Hb_000703_130 Hb_188063_010 Hb_188063_010 Hb_000836_020--Hb_188063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6694 22.0383 8.0489 8.87833 9.79276 9.98896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56793 4.53777 5.18408 9.74338 13.9779

CAGE analysis