Hb_003581_170

Information

Type -
Description -
Location Contig3581: 135584-144760
Sequence    

Annotation

kegg
ID rcu:RCOM_0697970
description alpha-amylase, putative (EC:3.2.1.60)
nr
ID XP_012091935.1
description PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q94A41
description Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=AMY3 PE=2 SV=1
trembl
ID A0A067JNZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21695 PE=4 SV=1
Gene Ontology
ID GO:0004556
description alpha-amylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36950: 135676-136482 , PASA_asmbl_36951: 137086-139775 , PASA_asmbl_36953: 139782-140191 , PASA_asmbl_36954: 143177-144846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_170 0.0 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
2 Hb_000105_040 0.0523856452 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
3 Hb_000176_100 0.054004024 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
4 Hb_000949_010 0.0554617262 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
5 Hb_001699_280 0.0575966012 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
6 Hb_011242_060 0.0600412252 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
7 Hb_000836_020 0.0612076686 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
8 Hb_188063_010 0.0615597217 - - hypothetical protein RCOM_1469330 [Ricinus communis]
9 Hb_001959_020 0.0617592752 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
10 Hb_000069_410 0.0633446693 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
11 Hb_005542_140 0.0656034719 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
12 Hb_000665_230 0.0660062178 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
13 Hb_005832_010 0.0660471979 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
14 Hb_000703_130 0.0664875115 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
15 Hb_005568_040 0.0667526962 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
16 Hb_000479_240 0.0674263677 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
17 Hb_002333_050 0.0691210949 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
18 Hb_002400_140 0.0692131217 - - protein kinase, putative [Ricinus communis]
19 Hb_000025_710 0.0699872024 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
20 Hb_001951_170 0.0702521904 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_170 Hb_003581_170 Hb_000105_040 Hb_000105_040 Hb_003581_170--Hb_000105_040 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_001699_280 Hb_001699_280 Hb_003581_170--Hb_001699_280 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_000105_040--Hb_001699_280 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_001951_170 Hb_001951_170 Hb_000105_040--Hb_001951_170 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_005357_260 Hb_005357_260 Hb_000176_100--Hb_005357_260 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030 Hb_003284_030 Hb_003284_030 Hb_000949_010--Hb_003284_030 Hb_011947_050 Hb_011947_050 Hb_000949_010--Hb_011947_050 Hb_000949_010--Hb_001959_020 Hb_174865_020 Hb_174865_020 Hb_000949_010--Hb_174865_020 Hb_188063_010 Hb_188063_010 Hb_001699_280--Hb_188063_010 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001699_280--Hb_001951_170 Hb_000069_470 Hb_000069_470 Hb_011242_060--Hb_000069_470 Hb_000265_090 Hb_000265_090 Hb_011242_060--Hb_000265_090 Hb_003729_030 Hb_003729_030 Hb_011242_060--Hb_003729_030 Hb_011242_060--Hb_000836_020 Hb_000321_150 Hb_000321_150 Hb_011242_060--Hb_000321_150 Hb_000836_020--Hb_001699_280 Hb_000836_020--Hb_000265_090 Hb_000836_020--Hb_000703_130 Hb_000836_020--Hb_188063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05225 11.3591 3.55081 5.05989 5.9243 6.32474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13 2.41911 3.17804 6.46649 6.0333

CAGE analysis