Hb_000105_040

Information

Type -
Description -
Location Contig105: 44413-81444
Sequence    

Annotation

kegg
ID tcc:TCM_007272
description Target of rapamycin isoform 1
nr
ID XP_012093195.1
description PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
swissprot
ID Q9FR53
description Serine/threonine-protein kinase TOR OS=Arabidopsis thaliana GN=TOR PE=1 SV=1
trembl
ID A0A067L810
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16390 PE=4 SV=1
Gene Ontology
ID GO:0000975
description target of rapamycin isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01692: 44451-45657 , PASA_asmbl_01693: 45725-81281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000105_040 0.0 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
2 Hb_001935_140 0.0412483516 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
3 Hb_001699_280 0.0476890025 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
4 Hb_003581_170 0.0523856452 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
5 Hb_005542_140 0.0666634702 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
6 Hb_000069_410 0.0697591613 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
7 Hb_001951_170 0.0709622939 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
8 Hb_005568_040 0.0709839109 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
9 Hb_000479_240 0.0737164354 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
10 Hb_002400_140 0.0739321205 - - protein kinase, putative [Ricinus communis]
11 Hb_003604_050 0.0744769442 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
12 Hb_004586_290 0.076844559 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
13 Hb_188063_010 0.0772728487 - - hypothetical protein RCOM_1469330 [Ricinus communis]
14 Hb_011828_030 0.0775090133 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
15 Hb_010809_010 0.0776258616 - - Na+/H+ antiporter [Populus euphratica]
16 Hb_007054_040 0.0777609786 - - PREDICTED: protein RST1 [Jatropha curcas]
17 Hb_011242_060 0.080237053 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
18 Hb_023226_080 0.0803794688 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
19 Hb_002960_080 0.0817246847 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
20 Hb_032808_030 0.0817540599 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000105_040 Hb_000105_040 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_001699_280 Hb_001699_280 Hb_000105_040--Hb_001699_280 Hb_003581_170 Hb_003581_170 Hb_000105_040--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_001951_170 Hb_001951_170 Hb_000105_040--Hb_001951_170 Hb_001541_250 Hb_001541_250 Hb_001935_140--Hb_001541_250 Hb_007054_040 Hb_007054_040 Hb_001935_140--Hb_007054_040 Hb_000862_040 Hb_000862_040 Hb_001935_140--Hb_000862_040 Hb_001935_140--Hb_003581_170 Hb_001935_140--Hb_005542_140 Hb_188063_010 Hb_188063_010 Hb_001699_280--Hb_188063_010 Hb_001699_280--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001699_280--Hb_001951_170 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010 Hb_001821_090 Hb_001821_090 Hb_000069_410--Hb_001821_090 Hb_001575_010 Hb_001575_010 Hb_000069_410--Hb_001575_010 Hb_000069_410--Hb_003581_170 Hb_000069_410--Hb_023226_080 Hb_000069_410--Hb_001699_280 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_005832_010 Hb_005832_010 Hb_001951_170--Hb_005832_010 Hb_006031_010 Hb_006031_010 Hb_001951_170--Hb_006031_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_002007_110 Hb_002007_110 Hb_001951_170--Hb_002007_110 Hb_000331_580 Hb_000331_580 Hb_001951_170--Hb_000331_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.60439 31.4969 8.04586 14.2251 13.5033 14.4211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.44903 8.62275 7.9344 19.8275 14.6771

CAGE analysis