Hb_023226_080

Information

Type transcription factor
Description TF Family: C3H
Location Contig23226: 97824-109728
Sequence    

Annotation

kegg
ID rcu:RCOM_1338910
description hypothetical protein
nr
ID XP_012075636.1
description PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
swissprot
ID A9LNK9
description 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
trembl
ID A0A067KFN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09230 PE=4 SV=1
Gene Ontology
ID GO:0005847
description 30-kda cleavage and polyadenylation specificity factor 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24428: 97870-109442 , PASA_asmbl_24430: 107855-109442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023226_080 0.0 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
2 Hb_005542_140 0.0503647925 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
3 Hb_000176_100 0.0595637915 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
4 Hb_000069_410 0.0649599217 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
5 Hb_159558_010 0.0649870761 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
6 Hb_000012_260 0.0662322096 - - Far upstream element-binding 2 [Gossypium arboreum]
7 Hb_009615_170 0.0663127424 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
8 Hb_002006_040 0.0667568161 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
9 Hb_007426_060 0.0690026037 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
10 Hb_004884_150 0.0696722211 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
11 Hb_000412_010 0.0711812763 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_001959_020 0.0718417083 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
13 Hb_000862_040 0.0720228604 - - ara4-interacting protein, putative [Ricinus communis]
14 Hb_004586_290 0.0739992806 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
15 Hb_001628_070 0.0744646589 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_003581_170 0.0760774991 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
17 Hb_003284_030 0.076978801 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
18 Hb_001821_090 0.0776906071 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
19 Hb_000614_210 0.0781269112 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
20 Hb_003058_060 0.0788149234 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_023226_080 Hb_023226_080 Hb_005542_140 Hb_005542_140 Hb_023226_080--Hb_005542_140 Hb_000176_100 Hb_000176_100 Hb_023226_080--Hb_000176_100 Hb_000069_410 Hb_000069_410 Hb_023226_080--Hb_000069_410 Hb_159558_010 Hb_159558_010 Hb_023226_080--Hb_159558_010 Hb_000012_260 Hb_000012_260 Hb_023226_080--Hb_000012_260 Hb_009615_170 Hb_009615_170 Hb_023226_080--Hb_009615_170 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_005357_260 Hb_005357_260 Hb_000176_100--Hb_005357_260 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030 Hb_001821_090 Hb_001821_090 Hb_000069_410--Hb_001821_090 Hb_001575_010 Hb_001575_010 Hb_000069_410--Hb_001575_010 Hb_000069_410--Hb_003581_170 Hb_001699_280 Hb_001699_280 Hb_000069_410--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_000069_410--Hb_000105_040 Hb_000614_210 Hb_000614_210 Hb_159558_010--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_159558_010--Hb_001814_030 Hb_000174_060 Hb_000174_060 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_159558_010--Hb_009615_170 Hb_003835_070 Hb_003835_070 Hb_000012_260--Hb_003835_070 Hb_000656_380 Hb_000656_380 Hb_000012_260--Hb_000656_380 Hb_000012_260--Hb_000614_210 Hb_003058_060 Hb_003058_060 Hb_000012_260--Hb_003058_060 Hb_000107_660 Hb_000107_660 Hb_000012_260--Hb_000107_660 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_009615_170--Hb_000174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.99149 20.6286 8.11272 8.44023 13.7221 11.2218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.00706 7.07721 8.79324 14.8701 9.29966

CAGE analysis